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2
votes
6
replies
2.7k
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LRE3 Retrotransposon sequence
L1 LINE1 LRE3 retrotransposon
9.7 years ago by nchuang ▴ 260
0
votes
2
replies
1.8k
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Best way to look at nonsynonymous changes in a collection of sequences?
SNP
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 260
0
votes
1
reply
4.9k
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Answer: A: Calling large indels from NGS
10.1 years ago by nchuang ▴ 260
1
vote
0
replies
13k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
10.2 years ago by nchuang ▴ 260
1
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0
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13k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
10.2 years ago by nchuang ▴ 260
0
votes
1
reply
13k
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Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
10.2 years ago by nchuang ▴ 260
0
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0
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12k
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Comment: C: GWAS: when is it appropriate to add covariates?
10.2 years ago by nchuang ▴ 260
23
votes
3
replies
12k
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GWAS: when is it appropriate to add covariates?
genome gwas
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 260
2
votes
0
replies
3.4k
views
Answer: Answer: Pre-phasing for imputation BEAGLE or MACH
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 260
0
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1
reply
6.0k
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Comment: C: Hardy-Weinberg assumptions in variant calling
10.3 years ago by nchuang ▴ 260
11
votes
7
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6.0k
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Hardy-Weinberg assumptions in variant calling
genome SNP
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 260
0
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1
reply
6.0k
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Comment: C: Hardy-Weinberg assumptions in variant calling
10.3 years ago by nchuang ▴ 260
0
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0
replies
1.9k
views
What could account for these strange SNP discrepancies?
SNP GATK ANNOVAR
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 260
3
votes
5
replies
4.9k
views
GATK jointgenotyping file locking and too many open files woes
GATK
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 260
0
votes
1
reply
4.9k
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Comment: Comment: GATK jointgenotyping file locking and too many open files woes
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 260
0
votes
0
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4.9k
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Comment: Comment: GATK jointgenotyping file locking and too many open files woes
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 260
0
votes
0
replies
14k
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Comment: Comment: How to count SNPs, InDels
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 260
1
vote
1
reply
14k
views
Comment: Comment: How to count SNPs, InDels
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 260
0
votes
0
replies
37k
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Comment: C: Count Of Variants
10.3 years ago by nchuang ▴ 260
1
vote
0
replies
3.3k
views
General approach for genotype refinement after GATK processing?
sequencing SNP
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 260
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