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answers
4
votes
1
reply
13k
views
Answer:
A: How to tell which transcript is the canonical transcript?
4.8 years ago by
igor
13k
1
vote
0
replies
1.4k
views
Answer:
A: Why does every database have a different set of exons for TP53 (and other genes)
4.8 years ago by
igor
13k
0
votes
0
replies
6.5k
views
Answer:
A: What batch correction was applied to pan-Cancer mRNA expression data?
4.8 years ago by
igor
13k
4
votes
0
replies
4.7k
views
Answer:
A: scRNAseq: Split FASTQ into cell specific FASTQ Files
4.8 years ago by
igor
13k
1
vote
0
replies
1.0k
views
Answer:
A: Help regarding RNAseq data analysis.
4.8 years ago by
igor
13k
2
votes
1
reply
2.8k
views
Answer:
C: Bowtie2 hg19 reference for gatk MuTect
4.9 years ago by
igor
13k
2
votes
1
reply
17k
views
Answer:
A: Using SCTransform with Seurat for multi-sample RNA-seq data
4.9 years ago by
igor
13k
2
votes
1
reply
4.7k
views
Answer:
A: Insert Size Metrics of ATAC-Seq data
4.9 years ago by
igor
13k
4
votes
0
replies
7.0k
views
Answer:
A: Seurat vs Monocle
4.9 years ago by
igor
13k
3
votes
1
reply
3.3k
views
Answer:
A: Visualizing gene density along the chromosome
4.9 years ago by
igor
13k
2
votes
0
replies
1.3k
views
Answer:
A: Binary mutation data format
5.1 years ago by
igor
13k
8
votes
3
replies
9.9k
views
Answer:
A: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ...
5.1 years ago by
igor
13k
2
votes
1
reply
3.1k
views
Answer:
A: ExAC non-TCGA mean
5.1 years ago by
igor
13k
5
votes
1
reply
3.2k
views
Answer:
A: RNA-seq: is there a way to get the variability between biological replicates ?
5.1 years ago by
igor
13k
1
vote
0
replies
4.1k
views
Answer:
A: Insert size of -20bp with ATAC-seq?
5.2 years ago by
igor
13k
4
votes
1
reply
17k
views
Answer:
A: TPM values of expressed genes
5.2 years ago by
igor
13k
1
vote
0
replies
2.1k
views
Answer:
A: why is variant calling difficult?
5.2 years ago by
igor
13k
4
votes
2
replies
6.0k
views
Answer:
A: normalization in single cell RNAseq
5.2 years ago by
igor
13k
1
vote
0
replies
2.3k
views
Answer:
A: VarScan: How is the DP score in a .vcf calculated?
5.3 years ago by
igor
13k
0
votes
1
reply
3.4k
views
Answer:
A: gene counts in Seurat after RunCCA() and AlignSubspace()
5.3 years ago by
igor
13k
1
vote
0
replies
11k
views
Answer:
A: How can i control the cluster number in scRNASeq clustering by Seurat package
5.4 years ago by
igor
13k
1
vote
0
replies
3.3k
views
Answer:
A: Suggested pipelines for finding somatic mutations using RNAseq in normal and tum
5.4 years ago by
igor
13k
1
vote
0
replies
848
views
Answer:
A: Choice of ref. Genomes
5.4 years ago by
igor
13k
0
votes
0
replies
4.4k
views
Answer:
A: Interpretation of TCGA clinical data
5.4 years ago by
igor
13k
3
votes
1
reply
1.5k
views
Answer:
A: Why is my features different between featurecounts and cuffnorm?
5.5 years ago by
igor
13k
1
vote
1
reply
9.8k
views
Answer:
A: Analyzing digital gene expression data (DGE) from drop-seq pipeline with Seurat.
5.5 years ago by
igor
13k
3
votes
0
replies
1.7k
views
Answer:
A: find out whether cell lines are verified
5.5 years ago by
igor
13k
2
votes
1
reply
13k
views
Answer:
A: Seurat scRNAseq analysis: what is the mito gene list
5.5 years ago by
igor
13k
2
votes
0
replies
19k
views
Answer:
A: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.6 years ago by
igor
13k
1
vote
0
replies
3.2k
views
Answer:
A: BSgenome.Hsapiens.UCSC.hg38 vs BSgenome.Hsapiens.NCBI.GRCh38
5.6 years ago by
igor
13k
3
votes
1
reply
4.3k
views
Answer:
A: Finding Only Protein Coding Genes from Gencode GTF
5.6 years ago by
igor
13k
11
votes
2
replies
36k
views
Answer:
A: ATAC-seq peak calling with MACS
5.6 years ago by
igor
13k
1
vote
1
reply
12k
views
Answer:
A: GSEA on single-cell cluster data
5.6 years ago by
igor
13k
1
vote
0
replies
1.3k
views
Answer:
A: Is it possible to detect somatic SNVs from C57BL/6 tumor samples WXS without nor
5.6 years ago by
igor
13k
2
votes
1
reply
1.6k
views
Answer:
A: Looking for chimp genome index (STAR)
5.6 years ago by
igor
13k
1
vote
2
replies
2.9k
views
Answer:
A: Retrieve the sequence based on the start and end position in the cuffmerged.gtf
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
igor
13k
1
vote
1
reply
11k
views
Answer:
A: MuTect2 VCF file
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
igor
13k
1
vote
0
replies
1.9k
views
Answer:
A: Visualization of chromosomal locations
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
igor
13k
1
vote
0
replies
2.8k
views
Answer:
A: TCGA tumor/normal RNA-seq somatic mutation calling
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
igor
13k
4
votes
0
replies
6.7k
views
Answer:
A: Download all DNA mutations from TCGA
5.7 years ago by
igor
13k
3
votes
1
reply
1.8k
views
Answer:
A: Opinion on FastQC output for HiSeq 4000 PE sequencing run
5.8 years ago by
igor
13k
1
vote
0
replies
1.5k
views
Answer:
A: How big are TAD boundaries?
5.8 years ago by
igor
13k
5
votes
0
replies
9.2k
views
Answer:
A: Inferring genotype based on RNA sequnces
5.8 years ago by
igor
13k
2
votes
0
replies
4.8k
views
Answer:
A: obtaining unique peaks in DiffBind
5.8 years ago by
igor
13k
0
votes
0
replies
2.0k
views
Answer:
A: 10X based Single cell sequencing for comparing two different disease states
5.9 years ago by
igor
13k
3
votes
0
replies
1.8k
views
Answer:
A: Asking about programs and methods to get gene methylation profiles
5.9 years ago by
igor
13k
1
vote
0
replies
3.1k
views
Answer:
A: Salmon choosing library type
5.9 years ago by
igor
13k
0
votes
1
reply
9.1k
views
Answer:
A: Filtering rRNA from RNAseq data
5.9 years ago by
igor
13k
5
votes
2
replies
4.4k
views
Answer:
A: Estimating cross contamination in a set of BAMS
5.9 years ago by
igor
13k
0
votes
0
replies
1.3k
views
Answer:
A: how to make this plot for mutation in paired samples?
5.9 years ago by
igor
13k
457 results • Page
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