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8.5k
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Answer: A: Cellranger aggr versus Seurat
4.0 years ago by igor 13k
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1
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609
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Answer: C: Do tools doing clonal evolution analysis work on unmatched samples too
4.0 years ago by igor 13k
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973
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Answer: A: Seurat - weird behavior in the counts object.
4.0 years ago by igor 13k
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1.1k
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Answer: C: What is the best approach to normalize exon read counts between samples ?
4.0 years ago by igor 13k
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2.2k
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Answer: C: cellRanger 2.0 to Seurat 3.1.2
4.0 years ago by igor 13k
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1
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962
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Answer: A: MD5 not the same between contig and reference; both Unified Genotyper and Haplot
4.1 years ago by igor 13k
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3.5k
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Answer: A: Create your own gene set collection
4.1 years ago by igor 13k
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0
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3.8k
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Answer: A: Normalization of index sort data in Seurat
4.1 years ago by igor 13k
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0
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1.3k
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Answer: A: WES NGS Quality Control
4.2 years ago by igor 13k
2
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0
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18k
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Answer: Answer: GSEA analysis with Mouse (Please give some comments..)
updated 16 months ago by 43k • written 8.9 years ago by 13k
5
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1
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17k
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Answer: A: Performing GSEA using MSigDB gene sets in R
4.2 years ago by igor 13k
1
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1
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28k
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Answer: A: [Single-Cell] How to build a table with gene expression by cell type with Seurat
4.2 years ago by igor 13k
4
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1
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1.4k
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Answer: A: Question about species, supported by the clusterProfiler R package
4.2 years ago by igor 13k
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6.1k
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Answer: A: Converting CPM to FPKM or TMM?
4.3 years ago by igor 13k
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1
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4.7k
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Answer: A: RNA velocity plot demystified
4.3 years ago by igor 13k
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0
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5.5k
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Answer: A: ATAC-seq 150bp reads
4.3 years ago by igor 13k
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0
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2.7k
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Answer: A: Mouse Strains in mm10/GRCm38 dbSNP 142?
4.3 years ago by igor 13k
2
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0
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1.3k
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Answer: A: Drug impact on gene expression database?
4.3 years ago by igor 13k
2
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1
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2.4k
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Answer: A: Feature Selection in 10X scRNA-seq data
4.3 years ago by igor 13k
4
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0
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25k
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Answer: A: MACS2 Broad peaks output BED format
updated 4.3 years ago by 43k • written 8.3 years ago by 13k
1
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0
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940
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Answer: A: Mutation in epitope sequence and HLA binding preference
4.3 years ago by igor 13k
1
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2
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2.3k
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Answer: A: SOLiD reads unreadable to Bowtie after unpacking from .sra archive
updated 4.4 years ago by 43k • written 8.3 years ago by 13k
1
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0
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7.5k
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Answer: A: Quantification of RNA-Seq bam files (STAR + HTSeq count)
updated 4.4 years ago by 43k • written 8.3 years ago by 13k
0
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1
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7.6k
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Answer: A: Can anyone help me with normal-only calling for panel of normals(PON) with MuTec
updated 4.4 years ago by 43k • written 8.3 years ago by 13k
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3.9k
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Answer: A: Finding hg19 coordinates for primers to make BED file
updated 4.4 years ago by 43k • written 8.3 years ago by 13k
1
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1
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3.5k
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Answer: A: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
4.4 years ago by igor 13k
1
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1
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1.8k
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Answer: A: Using single sample gsea with tpm file
4.4 years ago by igor 13k
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0
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1.8k
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Answer: A: Seurat QC Metrics For Each Cluster and Cluster Composition
4.4 years ago by igor 13k
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0
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2.3k
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Answer: A: Puzzled by the different chicken genome assemblies
updated 4.4 years ago by 43k • written 8.4 years ago by 13k
2
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0
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4.8k
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Answer: A: Find closest gene to chromosome location
updated 4.4 years ago by 43k • written 8.4 years ago by 13k
3
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0
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1.1k
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Answer: A: scRNA-seq : about the sets of non-differential genes between the clusters of cel
4.4 years ago by igor 13k
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1
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3.0k
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Answer: A: GATK Interval list for processing mouse genome WGS
4.4 years ago by igor 13k
0
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0
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4.0k
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Answer: A: RSEM failed on miRNA read dataset
updated 4.4 years ago by 43k • written 8.5 years ago by 13k
4
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0
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8.9k
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Answer: A: fastest UMAP method
4.5 years ago by igor 13k
18
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0
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23k
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Answer: A: Where to download blacklisted regions?
4.5 years ago by igor 13k
3
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0
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1.5k
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Answer: A: plot principal component analysis: how to improve the graphics
4.5 years ago by igor 13k
1
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0
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3.6k
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Answer: A: Does Harmony batch correction for scRNA-seq require the same populations to be p
4.5 years ago by igor 13k
1
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1
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2.6k
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Answer: A: htseq counts normalization
4.5 years ago by igor 13k
0
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1
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1.3k
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Answer: A: is lineage analysis same as trajectory analysis
4.5 years ago by igor 13k
3
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0
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620
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Answer: A: TCGA datasets to explore the role of gene target in cancer
4.6 years ago by igor 13k
5
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2
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6.1k
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Answer: A: about batch correction in scRNA-seq
4.6 years ago by igor 13k
1
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2
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4.2k
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Answer: A: Is feature selection necessary before dimensional reduction in single-cell analy
4.6 years ago by igor 13k
4
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0
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1.6k
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Answer: A: Marker genes for a cell type in ScRNA
4.6 years ago by igor 13k
4
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0
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33k
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Answer: A: Seurat DefaultAssay "integrated" or "RNA" with integrated dataset????
4.6 years ago by igor 13k
0
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1
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1.9k
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Answer: A: variant calling using pseudoaligners
4.6 years ago by igor 13k
2
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0
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1.9k
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Answer: A: Seurat Integrated Analysis (RunMultiCCA)
4.6 years ago by igor 13k
0
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0
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1.7k
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Answer: A: Isoform level TCGA RNA-seq Expression data
4.6 years ago by igor 13k
5
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1
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4.4k
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Answer: A: Adapter trimming before mapping with Salmon
4.7 years ago by igor 13k
3
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0
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13k
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Answer: A: How to download dbSNP153 vcf files in hg19/GRCH37 version
4.7 years ago by igor 13k
3
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1
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1.3k
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Answer: A: How to know whether identified mutation signatures from my data are listed in CO
4.7 years ago by igor 13k
457 results • Page 2 of 10
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