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61
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17
replies
36k
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16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 21 months ago by 44k • written 11.2 years ago by ★ 2.1k
0
votes
1
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3.7k
views
Answer: A: How do I blast against a specific portion of the nr database?
updated 4.8 years ago by 44k • written 10.4 years ago by ★ 2.1k
3
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0
replies
10k
views
Answer: A: How to create a Blast database of viruses ?
updated 4.8 years ago by 44k • written 10.5 years ago by ★ 2.1k
2
votes
0
replies
18k
views
Answer: Answer: Workflow management software for pipeline development in NGS
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.1k
2
votes
0
replies
2.3k
views
Answer: A: Looking for a working copy of Picard metric definitions page
updated 5.0 years ago by 44k • written 10.3 years ago by ★ 2.1k
155
votes
44
replies
33k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 2.3 years ago by 44k • written 10.7 years ago by ★ 2.1k
3
votes
0
replies
3.5k
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Answer: A: Alternative to VEP.
6.0 years ago by Carlos Borroto ★ 2.1k
3
votes
0
replies
1.3k
views
Answer: A: Bottleneck for scattered subworkflows
6.0 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
5.1k
views
Comment: C: what tools to visualize structural variants VCF files?
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 2.1k
2
votes
1
reply
5.1k
views
Answer: A: what tools to visualize structural variants VCF files?
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 2.1k
6
votes
5
replies
3.9k
views
Is there a good way to test CWL tools and workflows?
cwl
updated 7 months ago by • 0 • written 6.5 years ago by ★ 2.1k
0
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1
reply
36k
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Comment: A: python script error: ImportError: No module named pysam
6.4 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
5.5k
views
Answer: A: Problem Downloading The Nt Database From Ncbi
6.9 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
10k
views
Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
7.4 years ago by Carlos Borroto ★ 2.1k
0
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2
replies
34k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
7.7 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
3.9k
views
Comment: C: Rsync and python for ftp.ncbi
8.3 years ago by Carlos Borroto ★ 2.1k
5
votes
2
replies
8.3k
views
Answer: A: How to calculate average coverage for all genes
8.4 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
5.7k
views
Answer: A: Human GRCh38 and dbSNP VCF and GATK
8.4 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
2.2k
views
Answer: A: How do I get the lengths of different regions targeted by the Nextera expanded r
8.4 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
3.0k
views
Comment: C: UMI for Exome Target Sequencing
8.5 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
4.0k
views
Answer: A: ClinVar local install
8.5 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
33k
views
Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
8.5 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
6.5k
views
Answer: A: How Successful are new Bioinformatics Software Companies?
8.5 years ago by Carlos Borroto ★ 2.1k
2
votes
0
replies
3.2k
views
Answer: A: Question about Variant Calling: Whole file VS multiple smaller files
8.5 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
3.2k
views
Comment: C: Question about Variant Calling: Whole file VS multiple smaller files
8.5 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
2.0k
views
Comment: C: Boston Genomics Hackathon (facilitated by NCBI)
8.5 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
22k
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Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
8.6 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
22k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
8.6 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
2.1k
views
Comment: C: Looking for a data base of functional SNPs.
8.6 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
2.1k
views
Answer: A: Looking for a data base of functional SNPs.
8.6 years ago by Carlos Borroto ★ 2.1k
8
votes
2
replies
11k
views
Answer: A: FreeBayes vs GATK's HaplotypeCaller
8.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
9.8k
views
Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
9.2 years ago by Carlos Borroto ★ 2.1k
2
votes
3
replies
3.5k
views
How does samblaster use library tag information if at all?
samblaster markduplicates
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.1k
3
votes
2
replies
22k
views
Answer: Answer: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.1k
0
votes
1
reply
33k
views
Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
10.0 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
3.5k
views
Comment: C: How does samblaster use library tag information if at all?
10.0 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
2.3k
views
Looking for a working copy of Picard metric definitions page
picard
10.3 years ago by Carlos Borroto ★ 2.1k
5
votes
9
replies
4.6k
views
Why Is "-Knownsites" Option Required In Gkno'S "Gatk-Count-Covariates" Tool?
gatk
updated 10.4 years ago by 20 • written 11.4 years ago by ★ 2.1k
5
votes
1
reply
42k
views
Answer: A: Will Python Take The Place Of R?
10.5 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
4.1k
views
Answer: A: Web-Browser-Based Sequence Alignment Visualization
10.5 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.6 years ago by Carlos Borroto ★ 2.1k
4
votes
1
reply
18k
views
Answer: A: How Do I Get Started Working With Rna-Seq Data
10.7 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
13
votes
19
replies
11k
views
How To Proper Fill Up @Rg (Readgroups) Information? Example?
gatk picard
10.7 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
11k
views
Answer: A: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
11k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
10.7 years ago by Carlos Borroto ★ 2.1k
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