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55
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17
replies
25k
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16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 7 weeks ago by ▴ 60 • written 8.0 years ago by ★ 1.9k
0
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1
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2.7k
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Answer: A: How do I blast against a specific portion of the nr database?
updated 19 months ago by 34k • written 7.2 years ago by ★ 1.9k
3
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0
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7.6k
views
Answer: A: How to create a Blast database of viruses ?
updated 19 months ago by 34k • written 7.3 years ago by ★ 1.9k
2
votes
0
replies
13k
views
Answer: A: Workflow management software for pipeline development in NGS
updated 21 months ago by 34k • written 6.8 years ago by ★ 1.9k
2
votes
0
replies
1.7k
views
Answer: A: Looking for a working copy of Picard metric definitions page
updated 21 months ago by 34k • written 7.1 years ago by ★ 1.9k
151
votes
44
replies
23k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
2.7 years ago by Carlos Borroto ★ 1.9k
3
votes
0
replies
1.7k
views
Answer: A: Alternative to VEP.
2.8 years ago by Carlos Borroto ★ 1.9k
3
votes
0
replies
639
views
Answer: A: Bottleneck for scattered subworkflows
2.8 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
3.8k
views
Comment: C: what tools to visualize structural variants VCF files?
updated 2.9 years ago by 34k • written 5.4 years ago by ★ 1.9k
2
votes
1
reply
3.8k
views
Answer: A: what tools to visualize structural variants VCF files?
updated 2.9 years ago by 34k • written 5.4 years ago by ★ 1.9k
5
votes
4
replies
2.1k
views
Is there a good way to test CWL tools and workflows?
cwl
updated 3.1 years ago by ▴ 360 • written 3.3 years ago by ★ 1.9k
0
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1
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21k
views
Comment: A: python script error: ImportError: No module named pysam
3.2 years ago by Carlos Borroto ★ 1.9k
0
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0
replies
4.0k
views
Answer: A: Problem Downloading The Nt Database From Ncbi
3.7 years ago by Carlos Borroto ★ 1.9k
1
vote
0
replies
7.7k
views
Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
4.2 years ago by Carlos Borroto ★ 1.9k
0
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2
replies
18k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.5 years ago by Carlos Borroto ★ 1.9k
1
vote
0
replies
2.7k
views
Comment: C: Rsync and python for ftp.ncbi
5.1 years ago by Carlos Borroto ★ 1.9k
3
votes
1
reply
4.9k
views
Answer: A: How to calculate average coverage for all genes
5.1 years ago by Carlos Borroto ★ 1.9k
1
vote
0
replies
4.6k
views
Answer: A: Human GRCh38 and dbSNP VCF and GATK
5.2 years ago by Carlos Borroto ★ 1.9k
2
votes
1
reply
1.4k
views
Answer: A: How do I get the lengths of different regions targeted by the Nextera expanded r
5.2 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
2.3k
views
Comment: C: UMI for Exome Target Sequencing
5.3 years ago by Carlos Borroto ★ 1.9k
1
vote
0
replies
2.3k
views
Answer: A: ClinVar local install
5.3 years ago by Carlos Borroto ★ 1.9k
1
vote
0
replies
23k
views
Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
5.3 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
4.4k
views
Answer: A: How Successful are new Bioinformatics Software Companies?
5.3 years ago by Carlos Borroto ★ 1.9k
2
votes
0
replies
2.2k
views
Answer: A: Question about Variant Calling: Whole file VS multiple smaller files
5.3 years ago by Carlos Borroto ★ 1.9k
0
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1
reply
2.2k
views
Comment: C: Question about Variant Calling: Whole file VS multiple smaller files
5.3 years ago by Carlos Borroto ★ 1.9k
0
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0
replies
1.2k
views
Comment: C: Boston Genomics Hackathon (facilitated by NCBI)
5.3 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
15k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
5.4 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
15k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
5.4 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
1.4k
views
Comment: C: Looking for a data base of functional SNPs.
5.4 years ago by Carlos Borroto ★ 1.9k
0
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1
reply
1.4k
views
Answer: A: Looking for a data base of functional SNPs.
5.4 years ago by Carlos Borroto ★ 1.9k
8
votes
2
replies
8.1k
views
Answer: A: FreeBayes vs GATK's HaplotypeCaller
5.5 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
6.0k
views
Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
5.9 years ago by Carlos Borroto ★ 1.9k
2
votes
3
replies
2.4k
views
How does samblaster use library tag information if at all?
samblaster markduplicates
updated 6.4 years ago by ▴ 30 • written 6.8 years ago by ★ 1.9k
3
votes
2
replies
15k
views
Answer: A: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
6.8 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
23k
views
Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
6.8 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
2.4k
views
Comment: C: How does samblaster use library tag information if at all?
6.8 years ago by Carlos Borroto ★ 1.9k
2
votes
1
reply
1.7k
views
Looking for a working copy of Picard metric definitions page
picard
7.1 years ago by Carlos Borroto ★ 1.9k
4
votes
9
replies
2.9k
views
Why Is "-Knownsites" Option Required In Gkno'S "Gatk-Count-Covariates" Tool?
gatk
updated 7.2 years ago by 20 • written 8.2 years ago by ★ 1.9k
5
votes
1
reply
35k
views
Answer: A: Will Python Take The Place Of R?
7.3 years ago by Carlos Borroto ★ 1.9k
2
votes
1
reply
2.9k
views
Answer: A: Web-Browser-Based Sequence Alignment Visualization
7.3 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.4 years ago by Carlos Borroto ★ 1.9k
4
votes
1
reply
16k
views
Answer: A: How Do I Get Started Working With Rna-Seq Data
7.5 years ago by Carlos Borroto ★ 1.9k
1
vote
1
reply
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
13
votes
19
replies
6.7k
views
How To Proper Fill Up @Rg (Readgroups) Information? Example?
gatk picard
7.5 years ago by Carlos Borroto ★ 1.9k
1
vote
1
reply
6.7k
views
Answer: A: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
0
votes
0
replies
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
0
votes
1
reply
6.7k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
7.5 years ago by Carlos Borroto ★ 1.9k
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