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63
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17
replies
38k
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16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 2.3 years ago by 45k • written 11.8 years ago by ★ 2.1k
0
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1
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3.9k
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Answer: A: How do I blast against a specific portion of the nr database?
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.1k
3
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0
replies
11k
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Answer: A: How to create a Blast database of viruses ?
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.1k
2
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0
replies
19k
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Answer: Answer: Workflow management software for pipeline development in NGS
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.1k
2
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0
replies
2.4k
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Answer: A: Looking for a working copy of Picard metric definitions page
updated 5.5 years ago by 45k • written 10.9 years ago by ★ 2.1k
155
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44
replies
35k
views
29 follow
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
updated 2.8 years ago by 45k • written 11.3 years ago by ★ 2.1k
3
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0
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3.9k
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Answer: A: Alternative to VEP.
6.6 years ago by Carlos Borroto ★ 2.1k
3
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0
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1.4k
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Answer: A: Bottleneck for scattered subworkflows
6.6 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
5.4k
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Comment: C: what tools to visualize structural variants VCF files?
updated 6.6 years ago by 45k • written 9.2 years ago by ★ 2.1k
2
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1
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5.4k
views
Answer: A: what tools to visualize structural variants VCF files?
updated 6.6 years ago by 45k • written 9.2 years ago by ★ 2.1k
6
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5
replies
4.2k
views
Is there a good way to test CWL tools and workflows?
cwl
updated 14 months ago by • 0 • written 7.1 years ago by ★ 2.1k
0
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1
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38k
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Comment: A: python script error: ImportError: No module named pysam
6.9 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
5.7k
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Answer: A: Problem Downloading The Nt Database From Ncbi
7.5 years ago by Carlos Borroto ★ 2.1k
1
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0
replies
10k
views
Answer: A: Difference Between Picards Mergebamalignment And Mergesamfiles
8.0 years ago by Carlos Borroto ★ 2.1k
0
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2
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37k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
8.2 years ago by Carlos Borroto ★ 2.1k
1
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0
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4.1k
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Comment: C: Rsync and python for ftp.ncbi
8.8 years ago by Carlos Borroto ★ 2.1k
5
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2
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9.1k
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Answer: A: How to calculate average coverage for all genes
8.9 years ago by Carlos Borroto ★ 2.1k
1
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0
replies
5.9k
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Answer: A: Human GRCh38 and dbSNP VCF and GATK
8.9 years ago by Carlos Borroto ★ 2.1k
2
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1
reply
2.3k
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Answer: A: How do I get the lengths of different regions targeted by the Nextera expanded r
8.9 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
3.2k
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Comment: C: UMI for Exome Target Sequencing
9.0 years ago by Carlos Borroto ★ 2.1k
1
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0
replies
4.4k
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Answer: A: ClinVar local install
9.0 years ago by Carlos Borroto ★ 2.1k
1
vote
0
replies
35k
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Answer: A: Which Bioinformatic Friendly Pipeline Building Framework?
9.0 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
7.0k
views
Answer: A: How Successful are new Bioinformatics Software Companies?
9.0 years ago by Carlos Borroto ★ 2.1k
2
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0
replies
3.5k
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Answer: A: Question about Variant Calling: Whole file VS multiple smaller files
9.1 years ago by Carlos Borroto ★ 2.1k
0
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1
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3.5k
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Comment: C: Question about Variant Calling: Whole file VS multiple smaller files
9.1 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
2.2k
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Comment: C: Boston Genomics Hackathon (facilitated by NCBI)
9.1 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
23k
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Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
9.1 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
23k
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Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
9.1 years ago by Carlos Borroto ★ 2.1k
0
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0
replies
2.3k
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Comment: C: Looking for a data base of functional SNPs.
9.1 years ago by Carlos Borroto ★ 2.1k
0
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1
reply
2.3k
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Answer: A: Looking for a data base of functional SNPs.
9.1 years ago by Carlos Borroto ★ 2.1k
8
votes
2
replies
12k
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Answer: A: FreeBayes vs GATK's HaplotypeCaller
9.2 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
10k
views
Comment: C: Bait/Target files for Picard HsMetrics (Exome Sequencing)
9.7 years ago by Carlos Borroto ★ 2.1k
2
votes
3
replies
3.8k
views
How does samblaster use library tag information if at all?
samblaster markduplicates
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.1k
3
votes
2
replies
23k
views
Answer: Answer: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.1k
0
votes
1
reply
35k
views
Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
10.5 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
3.8k
views
Comment: C: How does samblaster use library tag information if at all?
10.5 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
2.4k
views
Looking for a working copy of Picard metric definitions page
picard
10.9 years ago by Carlos Borroto ★ 2.1k
5
votes
9
replies
4.9k
views
Why Is "-Knownsites" Option Required In Gkno'S "Gatk-Count-Covariates" Tool?
gatk
updated 10.9 years ago by 20 • written 12.0 years ago by ★ 2.1k
5
votes
1
reply
44k
views
Answer: A: Will Python Take The Place Of R?
11.0 years ago by Carlos Borroto ★ 2.1k
2
votes
1
reply
4.3k
views
Answer: A: Web-Browser-Based Sequence Alignment Visualization
11.1 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.1 years ago by Carlos Borroto ★ 2.1k
4
votes
1
reply
19k
views
Answer: A: How Do I Get Started Working With Rna-Seq Data
11.2 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.2 years ago by Carlos Borroto ★ 2.1k
13
votes
19
replies
12k
views
How To Proper Fill Up @Rg (Readgroups) Information? Example?
gatk picard
11.2 years ago by Carlos Borroto ★ 2.1k
1
vote
1
reply
12k
views
Answer: A: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.2 years ago by Carlos Borroto ★ 2.1k
0
votes
0
replies
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.3 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.3 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.3 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.3 years ago by Carlos Borroto ★ 2.1k
0
votes
1
reply
12k
views
Comment: C: How To Proper Fill Up @Rg (Readgroups) Information? Example?
11.3 years ago by Carlos Borroto ★ 2.1k
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