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Comment: Comment: Sort blast result in format 6 by first column
4.4 years ago by seidel 11k
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3.1k
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Answer: Answer: what are the reasons to find so few Differentially expressed genes (DEGs)?
4.4 years ago by seidel 11k
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1.2k
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Comment: Comment: How to calculate the difference between the RNA-Seq individual samples?
4.4 years ago by seidel 11k
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1.1k
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Answer: Answer: fpkm values mismatch
4.4 years ago by seidel 11k
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5.8k
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Answer: Answer: Looping over a function in R, and needing a variable name to save output as uniq
4.4 years ago by seidel 11k
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1.7k
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Answer: Answer: Filtering duplicates with MACS2 after re-sequencing a sample to increase read de
updated 4.4 years ago by 45k • written 4.4 years ago by 11k
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1
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1.7k
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Comment: Comment: Filtering duplicates with MACS2 after re-sequencing a sample to increase read de
4.4 years ago by seidel 11k
2
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0
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4.3k
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Answer: Answer: Which R function can be used for intersection of genomic coordinates from one fi
4.4 years ago by seidel 11k
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0
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973
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Comment: Comment: is there a proper way to choose clusters in hierarchical clustering?
4.4 years ago by seidel 11k
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3.5k
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Comment: Comment: Where Does The Pvalue Comes From In Macs14
4.4 years ago by seidel 11k
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2
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1.9k
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Comment: Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
4.4 years ago by seidel 11k
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1
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1.7k
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Comment: Comment: Compare gene coverage across group o samples
4.4 years ago by seidel 11k
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1
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1.7k
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Answer: Answer: Compare gene coverage across group o samples
4.4 years ago by seidel 11k
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1
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1.5k
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Comment: Comment: Data visualisation, miRNA and mRNA network with pair data
4.4 years ago by seidel 11k
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1
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1.3k
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Comment: Comment: seqprep
4.4 years ago by seidel 11k
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1.6k
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Comment: Comment: bowtie2 unaligned option not writing to file
4.4 years ago by seidel 11k
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0
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1.2k
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Comment: Comment: Find the transcripts of genomic coordinates
4.4 years ago by seidel 11k
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0
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5.9k
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Comment: Comment: fastq-dump error
4.4 years ago by seidel 11k
2
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1
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1.6k
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Answer: Answer: bowtie2 unaligned option not writing to file
4.4 years ago by seidel 11k
1
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1
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1.4k
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Comment: Comment: common coordinates from 10 files
4.4 years ago by seidel 11k
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0
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13k
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Comment: Comment: When applying to a PhD program in Harvard or MIT, how many publications are reco
4.4 years ago by seidel 11k
1
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1
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2.0k
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Comment: Comment: How to use lapply to extract taxonomic information in my species list?
4.4 years ago by seidel 11k
1
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1
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2.0k
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Comment: Comment: How to use lapply to extract taxonomic information in my species list?
4.4 years ago by seidel 11k
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0
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1.6k
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Answer: Answer: What does “non-log-linear space” mean for genomic data?
4.5 years ago by seidel 11k
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0
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1.7k
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Answer: Answer: > 90% samples, DP > 10
4.5 years ago by seidel 11k
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1
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2.4k
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Comment: Comment: making of count matrix
4.5 years ago by seidel 11k
1
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0
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959
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Answer: Answer: Subset genomic intervals by other intervals
4.5 years ago by seidel 11k
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0
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1.6k
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Comment: Comment: MACS2 does not giving same result before and after chromosome extraction from ba
4.5 years ago by seidel 11k
2
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1
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1.6k
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Comment: Comment: MACS2 does not giving same result before and after chromosome extraction from ba
4.5 years ago by seidel 11k
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0
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2.9k
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Comment: Comment: How to plot "Distribution of SNPs per Mbp"
4.5 years ago by seidel 11k
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0
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1.4k
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Comment: Comment: Homer motif analysis
4.5 years ago by seidel 11k
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0
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697
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Comment: Comment: Network analysis issues
4.5 years ago by seidel 11k
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1
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1.1k
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Comment: Comment: HOMER peak-motif relationship as direct-indirect binding
4.5 years ago by seidel 11k
1
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0
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2.6k
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Comment: Comment: Extracting reads from BAM file based on partial read name
4.5 years ago by seidel 11k
1
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1
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2.6k
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Comment: Comment: Extracting reads from BAM file based on partial read name
4.5 years ago by seidel 11k
1
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1
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1.2k
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Answer: Answer: Help with record.id
4.5 years ago by seidel 11k
1
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0
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1.6k
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Answer: Answer: Colour in heatmap labels
4.6 years ago by seidel 11k
1
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1
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3.3k
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Comment: Comment: How to extend ChIP-seq reads from BAM file ?
4.6 years ago by seidel 11k
2
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0
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849
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Comment: Comment: How to extract this information
4.6 years ago by seidel 11k
2
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1
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2.0k
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Answer: Answer: In need of help with grad school genomic analysis project
4.6 years ago by seidel 11k
1
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1
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3.3k
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Answer: Answer: How to extend ChIP-seq reads from BAM file ?
4.6 years ago by seidel 11k
1
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0
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1.8k
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Comment: Comment: Hunting invisible characters?
4.6 years ago by seidel 11k
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0
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2.7k
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Comment: Comment: remove variable sites from vcf that only differ from reference.
updated 4.6 years ago by 45k • written 4.6 years ago by 11k
1
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1
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970
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Answer: Answer: question when using topgo
4.6 years ago by seidel 11k
0
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0
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1.7k
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Comment: Comment: Concatenating fasta files based on prefix ?
4.6 years ago by seidel 11k
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1
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1.5k
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Answer: Answer: How to obtain FDR across all regions investigated in DiffBind
4.6 years ago by seidel 11k
0
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0
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2.3k
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Answer: Answer: MA plots with similar distribution but display difference in significantly expre
4.6 years ago by seidel 11k
2
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0
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1.5k
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Comment: Comment: Could I analyze just a few genes of a BAM file?
4.6 years ago by seidel 11k
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0
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1.7k
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Comment: Comment: MACS2
4.6 years ago by seidel 11k
0
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0
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2.8k
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Comment: Comment: Explanation of Venn diagram output
4.6 years ago by seidel 11k
868 results • Page 9 of 18
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