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Answer: Answer: > 90% samples, DP > 10
2.9 years ago by seidel 11k
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617
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Answer: Answer: Subset genomic intervals by other intervals
2.9 years ago by seidel 11k
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1
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735
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Answer: Answer: Help with record.id
2.9 years ago by seidel 11k
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1.1k
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Answer: Answer: Colour in heatmap labels
3.0 years ago by seidel 11k
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1.3k
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Answer: Answer: In need of help with grad school genomic analysis project
3.0 years ago by seidel 11k
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2.2k
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Answer: Answer: How to extend ChIP-seq reads from BAM file ?
3.0 years ago by seidel 11k
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1
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639
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Answer: Answer: question when using topgo
3.0 years ago by seidel 11k
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1.0k
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Answer: Answer: How to obtain FDR across all regions investigated in DiffBind
3.0 years ago by seidel 11k
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1.4k
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Answer: Answer: MA plots with similar distribution but display difference in significantly expre
3.1 years ago by seidel 11k
2
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2.6k
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Answer: Answer: noisy chip-seq peaks
3.1 years ago by seidel 11k
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1.8k
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Answer: Answer: Explanation of Venn diagram output
3.1 years ago by seidel 11k
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1.1k
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Answer: A: Should I contact an author if I can find their data ?
3.1 years ago by seidel 11k
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1.4k
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Answer: C: Weird MAplot with DEGs lying along the diagonals
3.1 years ago by seidel 11k
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735
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Answer: C: GO Terms - most common between - many gene lists (from 36 scRNAseq clusters)
3.1 years ago by seidel 11k
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703
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Answer: C: Find out common genes in our dataset
3.1 years ago by seidel 11k
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1.0k
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Answer: A: Does the countToFPKM package work for single end RNA seq or its only for paired
3.2 years ago by seidel 11k
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0
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998
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Answer: A: change the header of fasta sequence
3.2 years ago by seidel 11k
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1
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756
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Answer: A: Over-expression of genes
3.2 years ago by seidel 11k
3
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1
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1.2k
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Answer: C: Robustness of Different Normalization Approaches
3.2 years ago by seidel 11k
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2.9k
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Answer: A: Bowtie2 command does not produce output file
3.3 years ago by seidel 11k
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0
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648
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Answer: A: P-adjusted value of 1
3.3 years ago by seidel 11k
2
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1
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1.9k
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Answer: A: WIG TO BIGWIG - UCSC SOFTWARE - ERROR IN "ITEM ENDS". <URGENT>
3.3 years ago by seidel 11k
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1.1k
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Answer: A: change name of scaffold to chromosome in .bam file
3.3 years ago by seidel 11k
2
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0
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2.8k
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Answer: A: How can I identify and remove outliers samples based on a MDS plot (limma packag
3.3 years ago by seidel 11k
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1.3k
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Answer: A: RNA-seq using DESeq2: quality control of replicates using PCA and heatmaps
3.3 years ago by seidel 11k
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0
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751
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Answer: A: Bedtools to make a bed file for promoter
3.6 years ago by seidel 11k
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2.3k
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Answer: A: How to compare two sets of results from Limma?
4.3 years ago by seidel 11k
11
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1
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12k
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Answer: A: Which statistical test should be used to test for enrichment of gene lists?
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
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3.7k
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Answer: A: Physical Lab Notebook for Computational Work
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
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0
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3.4k
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Answer: A: Gene expression-comparing replicates
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
3
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1
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12k
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Answer: A: How to generate a Venn diagram
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
13
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3
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14k
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Answer: A: linking ensembl gene ID to GO term?
updated 4.3 years ago by 43k • written 9.9 years ago by 11k
2
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0
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2.4k
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Answer: A: Concatenate mutiple samples from tophat to run cuffdiff
updated 4.3 years ago by 43k • written 10.0 years ago by 11k
4
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1
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5.5k
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Answer: A: genomicranges outside sequence bounds
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
1
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0
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3.4k
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Answer: A: Is there a standard to the range/breaks in z-score coloring for microarray expre
updated 4.4 years ago by 43k • written 10.0 years ago by 11k
1
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1
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3.4k
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Answer: A: Strand Specificity of Arrays and RNAseq
updated 4.5 years ago by 43k • written 8.7 years ago by 11k
0
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1
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13k
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Answer: A: Calculate FPKM value from bam files
updated 4.5 years ago by 43k • written 8.7 years ago by 11k
4
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1
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3.5k
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Answer: A: How to calculate differential gene expression from single sample on Affy GeneChi
updated 4.5 years ago by 43k • written 8.8 years ago by 11k
0
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1
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839
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Answer: A: how to compare the difference of read counts in a given region
4.5 years ago by seidel 11k
1
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1
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628
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Answer: A: Euclidean Clustering and pattern confusion
4.5 years ago by seidel 11k
20
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2
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40k
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Answer: A: How To Get The Subclusters From The Object Of Hclust() Using Cutree() According
updated 4.5 years ago by 43k • written 10.5 years ago by 11k
1
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1
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5.1k
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Answer: A: Best Workflow For Differential Expression Analysis Using De Novo Transcriptomes
updated 4.6 years ago by 43k • written 10.1 years ago by 11k
0
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0
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2.7k
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Answer: A: What Should Be Specified For The "--Mates_File_Ref" Parameter In The Sv Detect T
updated 4.6 years ago by 43k • written 10.1 years ago by 11k
3
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1
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14k
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Answer: A: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 4.6 years ago by 43k • written 10.6 years ago by 11k
2
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2
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3.6k
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Answer: A: Gene Expression Analysis - Microarrays - Geneset
updated 4.6 years ago by 43k • written 12.4 years ago by 11k
9
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1
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10k
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Answer: A: Limma Venn Diagram
updated 4.6 years ago by 43k • written 12.5 years ago by 11k
7
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1
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5.0k
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Answer: A: Rna-Seq Transcript Length Bias - Is There A 'Standard' Approach To Accounting Fo
updated 4.6 years ago by 43k • written 12.5 years ago by 11k
7
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0
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11k
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Answer: A: Reproducing this plot in R
5.3 years ago by seidel 11k
3
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0
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8.5k
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Answer: A: Creating Count Matrix
5.3 years ago by seidel 11k
2
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0
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952
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Answer: A: Perform GO analysis on genome
5.6 years ago by seidel 11k
328 results • Page 3 of 7
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