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Answer: Answer: Mapping chromosome location to gene ID
20 days ago by Alex Reynolds 34k
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325
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Answer: Answer: Comparing bed files for shifts and enlargements
20 days ago by Alex Reynolds 34k
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317
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Comment: Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
22 days ago by Alex Reynolds 34k
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313
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Answer: Answer: How to create bed file from list of variants with indels and bp values
5 weeks ago by Alex Reynolds 34k
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1
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405
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Comment: Comment: sliding windows over genome
6 weeks ago by Alex Reynolds 34k
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0
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450
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Comment: Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
6 weeks ago by Alex Reynolds 34k
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405
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Answer: Answer: sliding windows over genome
6 weeks ago by Alex Reynolds 34k
2
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1
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4.5k
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Comment: Comment: Finding Chip Seq Overlaps with Bed files
7 weeks ago by Alex Reynolds 34k
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282
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
7 weeks ago by Alex Reynolds 34k
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0
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286
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Answer: Answer: How to interpret similar motifs in Homer results
7 weeks ago by Alex Reynolds 34k
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0
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369
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Comment: Comment: Why the bed file not recognized as a bed file
9 weeks ago by Alex Reynolds 34k
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0
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369
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Answer: Answer: Why the bed file not recognized as a bed file
9 weeks ago by Alex Reynolds 34k
0
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1
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294
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Answer: Answer: Circos plot
10 weeks ago by Alex Reynolds 34k
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1
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380
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Answer: Answer: SARS-CoV-2 genome on NCBI website
10 weeks ago by Alex Reynolds 34k
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268
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Answer: Answer: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by Alex Reynolds 34k
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1
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268
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Comment: Comment: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by Alex Reynolds 34k
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372
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Comment: Comment: Find genes of interest in large unannotated genome files
3 months ago by Alex Reynolds 34k
4
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4
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1.2k
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How to iterate over rows of pyranges object
pyranges
updated 3 months ago by ▴ 10 • written 15 months ago by 34k
1
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372
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Answer: Answer: Find genes of interest in large unannotated genome files
3 months ago by Alex Reynolds 34k
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301
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Answer: Answer: bedtools -u not giving unique files
3 months ago by Alex Reynolds 34k
2
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536
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Answer: Answer: How to convert .wib files to .wig or .bed?
4 months ago by Alex Reynolds 34k
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0
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363
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Comment: Comment: Determining the transcription factor activators for a particular gene
4 months ago by Alex Reynolds 34k
6
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417
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Answer: Answer: Map genomic coordinate to specific chromosome region
4 months ago by Alex Reynolds 34k
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0
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315
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Answer: Answer: TET2 Binding Motifs BED file
4 months ago by Alex Reynolds 34k
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0
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315
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Comment: Comment: Non-zero return code 127 from
4 months ago by Alex Reynolds 34k
1
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0
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744
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Answer: Answer: Tips and tricks to improve data visualization in bioinformatics
4 months ago by Alex Reynolds 34k
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0
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540
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Comment: Comment: Mince a vcf into n bins of a given range
5 months ago by Alex Reynolds 34k
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1
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540
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Answer: Answer: Mince a vcf into n bins of a given range
5 months ago by Alex Reynolds 34k
2
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1
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538
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Answer: Answer: Change the interval of bed file
5 months ago by Alex Reynolds 34k
2
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1
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729
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Answer: Answer: How to create specific .bed files for a panel of genes
5 months ago by Alex Reynolds 34k
2
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1
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459
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Answer: Answer: Merge two multi-chromosome WIG files
5 months ago by Alex Reynolds 34k
1
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1
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996
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Answer: Answer: Getting peak heights from TF chIP-seq data (wig file)
5 months ago by Alex Reynolds 34k
1
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0
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1.7k
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Answer: Answer: Random Subset of Individuals from .BED File (.ped not available)
6 months ago by Alex Reynolds 34k
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0
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379
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Answer: Answer: are there some software to compute depth？
6 months ago by Alex Reynolds 34k
1
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1
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445
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Answer: Answer: Annotating genes from the coordinates of variants of a VCF file
6 months ago by Alex Reynolds 34k
1
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1
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2.0k
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Comment: Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
6 months ago by Alex Reynolds 34k
1
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1
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606
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Comment: Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
6 months ago by Alex Reynolds 34k
1
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1
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456
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Answer: Answer: How to describe an insertion in BED format file?
6 months ago by Alex Reynolds 34k
1
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0
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969
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Comment: Comment: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
2
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0
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403
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
6 months ago by Alex Reynolds 34k
1
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0
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969
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Comment: Comment: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
1
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1
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969
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Answer: Answer: To create a multi fasta file which contains each gene's exons
6 months ago by Alex Reynolds 34k
1
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0
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472
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Answer: Answer: Plotting a long string of (x,y) values as a chromosome
6 months ago by Alex Reynolds 34k
0
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0
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530
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Comment: Comment: Create junctions from Bed file for IGV visualization
6 months ago by Alex Reynolds 34k
1
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1
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530
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Answer: Answer: Create junctions from Bed file for IGV visualization
6 months ago by Alex Reynolds 34k
1
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1
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1.3k
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Answer: Answer: How to cut a 15000 sequence file into multiple files of 1000nt each and save it
6 months ago by Alex Reynolds 34k
0
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0
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559
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Comment: Comment: Bioinformatics in Graviton2 AWS
6 months ago by Alex Reynolds 34k
2
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0
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242
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News: BED format specification
bed bedops
6 months ago by Alex Reynolds 34k
0
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0
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754
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Comment: Comment: API for retrieving genes' sequences from genes' symbols in a single call
6 months ago by Alex Reynolds 34k
2
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1
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465
views
Answer: Answer: BEDOPS bedmap confusing file for option
6 months ago by Alex Reynolds 34k
2,781 results • Page 1 of 56
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