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2
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304
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Answer:
Answer: Mapping chromosome location to gene ID
20 days ago by
Alex Reynolds
34k
0
votes
0
replies
325
views
Answer:
Answer: Comparing bed files for shifts and enlargements
20 days ago by
Alex Reynolds
34k
0
votes
0
replies
317
views
Comment:
Comment: qualimap - bed file error - BED format error, there should be at least 6 fields.
22 days ago by
Alex Reynolds
34k
0
votes
0
replies
313
views
Answer:
Answer: How to create bed file from list of variants with indels and bp values
5 weeks ago by
Alex Reynolds
34k
0
votes
1
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405
views
Comment:
Comment: sliding windows over genome
6 weeks ago by
Alex Reynolds
34k
1
vote
0
replies
450
views
Comment:
Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
6 weeks ago by
Alex Reynolds
34k
0
votes
1
reply
405
views
Answer:
Answer: sliding windows over genome
6 weeks ago by
Alex Reynolds
34k
2
votes
1
reply
4.5k
views
Comment:
Comment: Finding Chip Seq Overlaps with Bed files
7 weeks ago by
Alex Reynolds
34k
0
votes
0
replies
282
views
Answer:
Answer: "moving average" function for "coverage" signal in bed files?
7 weeks ago by
Alex Reynolds
34k
1
vote
0
replies
286
views
Answer:
Answer: How to interpret similar motifs in Homer results
7 weeks ago by
Alex Reynolds
34k
1
vote
0
replies
369
views
Comment:
Comment: Why the bed file not recognized as a bed file
9 weeks ago by
Alex Reynolds
34k
0
votes
0
replies
369
views
Answer:
Answer: Why the bed file not recognized as a bed file
9 weeks ago by
Alex Reynolds
34k
0
votes
1
reply
294
views
Answer:
Answer: Circos plot
10 weeks ago by
Alex Reynolds
34k
0
votes
1
reply
380
views
Answer:
Answer: SARS-CoV-2 genome on NCBI website
10 weeks ago by
Alex Reynolds
34k
0
votes
0
replies
268
views
Answer:
Answer: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by
Alex Reynolds
34k
0
votes
1
reply
268
views
Comment:
Comment: deeptools plotHeatMap - Convert bed files to gene list?
3 months ago by
Alex Reynolds
34k
0
votes
0
replies
372
views
Comment:
Comment: Find genes of interest in large unannotated genome files
3 months ago by
Alex Reynolds
34k
4
votes
4
replies
1.2k
views
How to iterate over rows of pyranges object
pyranges
updated 3 months ago by
markfilan
▴ 10 • written 15 months ago by
Alex Reynolds
34k
1
vote
1
reply
372
views
Answer:
Answer: Find genes of interest in large unannotated genome files
3 months ago by
Alex Reynolds
34k
0
votes
1
reply
301
views
Answer:
Answer: bedtools -u not giving unique files
3 months ago by
Alex Reynolds
34k
2
votes
1
reply
536
views
Answer:
Answer: How to convert .wib files to .wig or .bed?
4 months ago by
Alex Reynolds
34k
0
votes
0
replies
363
views
Comment:
Comment: Determining the transcription factor activators for a particular gene
4 months ago by
Alex Reynolds
34k
6
votes
0
replies
417
views
Answer:
Answer: Map genomic coordinate to specific chromosome region
4 months ago by
Alex Reynolds
34k
0
votes
0
replies
315
views
Answer:
Answer: TET2 Binding Motifs BED file
4 months ago by
Alex Reynolds
34k
0
votes
0
replies
315
views
Comment:
Comment: Non-zero return code 127 from
4 months ago by
Alex Reynolds
34k
1
vote
0
replies
744
views
Answer:
Answer: Tips and tricks to improve data visualization in bioinformatics
4 months ago by
Alex Reynolds
34k
0
votes
0
replies
540
views
Comment:
Comment: Mince a vcf into n bins of a given range
5 months ago by
Alex Reynolds
34k
0
votes
1
reply
540
views
Answer:
Answer: Mince a vcf into n bins of a given range
5 months ago by
Alex Reynolds
34k
2
votes
1
reply
538
views
Answer:
Answer: Change the interval of bed file
5 months ago by
Alex Reynolds
34k
2
votes
1
reply
729
views
Answer:
Answer: How to create specific .bed files for a panel of genes
5 months ago by
Alex Reynolds
34k
2
votes
1
reply
459
views
Answer:
Answer: Merge two multi-chromosome WIG files
5 months ago by
Alex Reynolds
34k
1
vote
1
reply
996
views
Answer:
Answer: Getting peak heights from TF chIP-seq data (wig file)
5 months ago by
Alex Reynolds
34k
1
vote
0
replies
1.7k
views
Answer:
Answer: Random Subset of Individuals from .BED File (.ped not available)
6 months ago by
Alex Reynolds
34k
0
votes
0
replies
379
views
Answer:
Answer: are there some software to compute depth?
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
445
views
Answer:
Answer: Annotating genes from the coordinates of variants of a VCF file
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
2.0k
views
Comment:
Comment: How to search dbSNP using a list of SNPs and retrieve Gene name (hgnc symbol if
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
606
views
Comment:
Comment: Distinguishing between ambiguously mapped reads in a split bamToBed file
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
456
views
Answer:
Answer: How to describe an insertion in BED format file?
6 months ago by
Alex Reynolds
34k
1
vote
0
replies
969
views
Comment:
Comment: To create a multi fasta file which contains each gene's exons
6 months ago by
Alex Reynolds
34k
2
votes
0
replies
403
views
Answer:
Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
6 months ago by
Alex Reynolds
34k
1
vote
0
replies
969
views
Comment:
Comment: To create a multi fasta file which contains each gene's exons
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
969
views
Answer:
Answer: To create a multi fasta file which contains each gene's exons
6 months ago by
Alex Reynolds
34k
1
vote
0
replies
472
views
Answer:
Answer: Plotting a long string of (x,y) values as a chromosome
6 months ago by
Alex Reynolds
34k
0
votes
0
replies
530
views
Comment:
Comment: Create junctions from Bed file for IGV visualization
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
530
views
Answer:
Answer: Create junctions from Bed file for IGV visualization
6 months ago by
Alex Reynolds
34k
1
vote
1
reply
1.3k
views
Answer:
Answer: How to cut a 15000 sequence file into multiple files of 1000nt each and save it
6 months ago by
Alex Reynolds
34k
0
votes
0
replies
559
views
Comment:
Comment: Bioinformatics in Graviton2 AWS
6 months ago by
Alex Reynolds
34k
2
votes
0
replies
242
views
News:
BED format specification
bed
bedops
6 months ago by
Alex Reynolds
34k
0
votes
0
replies
754
views
Comment:
Comment: API for retrieving genes' sequences from genes' symbols in a single call
6 months ago by
Alex Reynolds
34k
2
votes
1
reply
465
views
Answer:
Answer: BEDOPS bedmap confusing file for option
6 months ago by
Alex Reynolds
34k
2,781 results • Page
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