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6.5k
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Comment: C: Bedtools sortBed | uniq and bash sort | uniq returns different number of lines
9.5 years ago by Alex Reynolds 36k
5
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4.9k
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Answer: A: How convert files .psl to files .bed?
9.5 years ago by Alex Reynolds 36k
2
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4.4k
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Answer: A: Identifying Exons and number of reads between exons from a BAM file
9.5 years ago by Alex Reynolds 36k
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2.5k
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Answer: A: Generate bed co-ordinates other then given inout bed file
9.5 years ago by Alex Reynolds 36k
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4.2k
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Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
9.6 years ago by Alex Reynolds 36k
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4.2k
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Comment: C: Annotate each peak to gene starts within 10 kb of the peak with python ?
9.6 years ago by Alex Reynolds 36k
0
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1
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4.2k
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Answer: A: Annotate each peak to gene starts within 10 kb of the peak with python ?
9.6 years ago by Alex Reynolds 36k
2
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5.2k
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Answer: A: quantify signal in a chromosomal interval in different .bw files
9.6 years ago by Alex Reynolds 36k
1
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1
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2.3k
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Answer: A: How can I ask bedops element-of to add additional informations in its output ?
9.6 years ago by Alex Reynolds 36k
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2.6k
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Answer: A: How to analysis coordinate density in whole gnome
9.6 years ago by Alex Reynolds 36k
3
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2.4k
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Answer: A: Extract rows if 2 column values has 21 in between
9.6 years ago by Alex Reynolds 36k
4
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1
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10k
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Answer: A: Extract data using awk/sed and output to different files
9.6 years ago by Alex Reynolds 36k
4
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1
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18k
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Answer: A: Annotating bed file with gene names
9.6 years ago by Alex Reynolds 36k
1
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1
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2.2k
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Answer: A: Is there any way to determine whether my sequenced data uses 0- or 1-based coord
9.6 years ago by Alex Reynolds 36k
3
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1
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3.9k
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Answer: A: bedtools intersectBed and GRanges countOverlaps
9.6 years ago by Alex Reynolds 36k
1
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0
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2.8k
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Comment: C: Visualize RSEM Results/Normalization
9.6 years ago by Alex Reynolds 36k
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1
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18k
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Comment: C: Search dbSNP for hg19 based coordinates
9.6 years ago by Alex Reynolds 36k
7
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8.5k
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Answer: A: how to substitue Nth character in a string using linux commands
9.6 years ago by Alex Reynolds 36k
0
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1
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8.5k
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Comment: C: how to substitue Nth character in a string using linux commands
9.6 years ago by Alex Reynolds 36k
1
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0
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2.2k
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Answer: A: Showing depth in table browser with bed format file
9.6 years ago by Alex Reynolds 36k
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0
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3.3k
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Comment: C: Bad Exprience on bigwig Format Visualization in UCSC
9.6 years ago by Alex Reynolds 36k
1
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0
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8.7k
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Answer: A: Downloading the UCSC gene annotation files
9.6 years ago by Alex Reynolds 36k
1
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1
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6.5k
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Comment: C: Sum column until a certain value is reached then print that line
9.6 years ago by Alex Reynolds 36k
2
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1
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9.6k
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Answer: A: how to find SNP positions (for non-bioinformaticians)
9.6 years ago by Alex Reynolds 36k
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6.6k
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Answer: A: How to convert the data from .wig file to .table or .csv?
9.6 years ago by Alex Reynolds 36k
1
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0
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2.2k
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Answer: A: How to remove the last character "," from each row in bed file?
9.6 years ago by Alex Reynolds 36k
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4.6k
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Comment: C: How to add a new column with consecutive integer number in a bed file?
9.6 years ago by Alex Reynolds 36k
2
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4.6k
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Answer: A: How to add a new column with consecutive integer number in a bed file?
9.6 years ago by Alex Reynolds 36k
1
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1
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3.8k
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Answer: A: Merge overlapping CDS using bed tools
9.6 years ago by Alex Reynolds 36k
0
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0
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4.3k
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Answer: A: Threshold for calling DNAse-seq peaks ON or OFF
9.6 years ago by Alex Reynolds 36k
2
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1
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1.5k
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Answer: A: remove some reads
9.6 years ago by Alex Reynolds 36k
1
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0
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13k
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Answer: A: FASTA file of fixed length
9.6 years ago by Alex Reynolds 36k
6
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2
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60k
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Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
9.7 years ago by Alex Reynolds 36k
3
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2
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3.8k
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Answer: A: Gene Regulatory Database
9.7 years ago by Alex Reynolds 36k
5
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0
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29k
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Answer: A: intersect VCF files
9.7 years ago by Alex Reynolds 36k
6
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0
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9.7k
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Answer: A: Finding gene density from reference genome using R
9.7 years ago by Alex Reynolds 36k
0
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0
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60k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
9.7 years ago by Alex Reynolds 36k
5
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0
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3.7k
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Answer: A: Calculate binned methylation data throughout hg19 with BEDOPS
9.7 years ago by Alex Reynolds 36k
0
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0
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2.9k
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Answer: A: Creating a fasta file
9.7 years ago by Alex Reynolds 36k
0
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0
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3.4k
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Answer: A: bedtools closest (output file format)
9.7 years ago by Alex Reynolds 36k
1
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1
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3.2k
views
Answer: A: Does BEDOPS sort-bed sort in the same order as sort -k1,1 -k2,2n?
9.7 years ago by Alex Reynolds 36k
1
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0
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3.3k
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Answer: A: Separating gene list into chromatin domains and analysing separately within each
9.7 years ago by Alex Reynolds 36k
1
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0
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7.3k
views
Answer: A: How to find if a string contains non overlapping block of repeated units? Python
9.7 years ago by Alex Reynolds 36k
3
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0
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2.0k
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Answer: A: Pulling all DNAse HS sites from ENCODE
9.7 years ago by Alex Reynolds 36k
0
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0
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3.0k
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Answer: A: Is there a simple way to get the max coverage of a bedgraph file in python?
9.7 years ago by Alex Reynolds 36k
0
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0
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35k
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Comment: C: venndiagram for 6 sets
9.7 years ago by Alex Reynolds 36k
1
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1
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6.6k
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Answer: A: How can I get a list of all SNPs from a gene of my interest?
9.7 years ago by Alex Reynolds 36k
0
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0
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2.0k
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Answer: A: bedtools, linux, rnaseq
9.7 years ago by Alex Reynolds 36k
1
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0
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2.0k
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Comment: C: bedtools, linux, rnaseq
9.7 years ago by Alex Reynolds 36k
0
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0
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46k
views
Answer: A: how to set the size of cell of heatmap.2 in R
9.7 years ago by Alex Reynolds 36k
2,902 results • Page 41 of 59
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