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2
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327
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Answer: Answer: Why do highly expressed genes vary more than lowly expressed genes?
8 months ago by Lior Pachter ▴ 660
1
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0
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1.2k
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Comment: Comment: Efficient querying of genomic reference databases with gget
10 months ago by Lior Pachter ▴ 660
3
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1
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1.2k
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Comment: Comment: Efficient querying of genomic reference databases with gget
10 months ago by Lior Pachter ▴ 660
2
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0
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917
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Comment: Comment: fastq.gz download error
10 months ago by Lior Pachter ▴ 660
0
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1
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8.0k
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Comment: C: How to get read counts on transcript level using featurecounts?
3.1 years ago by Lior Pachter ▴ 660
1
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0
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8.0k
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Comment: C: How to get read counts on transcript level using featurecounts?
3.1 years ago by Lior Pachter ▴ 660
1
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0
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8.0k
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Comment: C: How to get read counts on transcript level using featurecounts?
3.1 years ago by Lior Pachter ▴ 660
0
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1
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8.0k
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Comment: C: How to get read counts on transcript level using featurecounts?
3.1 years ago by Lior Pachter ▴ 660
1
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0
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1.0k
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Comment: C: Kallisto in snakePipes instead of salmon
updated 3.1 years ago by 38k • written 3.1 years ago by ▴ 660
1
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0
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2.5k
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Comment: C: Cellranger data to Monocle Pseudotime
3.2 years ago by Lior Pachter ▴ 660
1
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1
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1.2k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
3.2 years ago by Lior Pachter ▴ 660
14
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1
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33k
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Answer: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 3.4 years ago by 38k • written 7.6 years ago by ▴ 660
3
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0
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3.1k
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Answer: A: differential expression at transcript level with paired samples
updated 3.4 years ago by 38k • written 7.6 years ago by ▴ 660
2
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0
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4.5k
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Comment: C: RNA velocity on 5' 10x data?
3.4 years ago by Lior Pachter ▴ 660
2
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1
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650
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Answer: A: RNA-Seq quantification of a heterozygous individual with a short deletion
3.5 years ago by Lior Pachter ▴ 660
7
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1
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23k
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Answer: A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
3.5 years ago by Lior Pachter ▴ 660
0
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0
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3.6k
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Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
3.6 years ago by Lior Pachter ▴ 660
4
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1
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3.6k
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Answer: A: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
updated 3.6 years ago by 38k • written 3.6 years ago by ▴ 660
0
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1
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2.1k
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Comment: C: How to append R1(Barcode+UMI) to header of R2(Read data)
3.6 years ago by Lior Pachter ▴ 660
4
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0
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5.5k
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Answer: A: about the use of CellRanger aggr
3.7 years ago by Lior Pachter ▴ 660
1
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1
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1.3k
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Comment: C: rnaseqcomp for own data withoutref genes
3.7 years ago by Lior Pachter ▴ 660
0
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0
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6.1k
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Comment: C: RNA-Seq: Getting Started with Kallisto
3.7 years ago by Lior Pachter ▴ 660
0
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3
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8.3k
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Answer: A: Build a Kallisto transcriptome index
3.7 years ago by Lior Pachter ▴ 660
0
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0
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1.2k
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Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
3.7 years ago by Lior Pachter ▴ 660
2
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1
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6.1k
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Answer: A: RNA-Seq: Getting Started with Kallisto
3.7 years ago by Lior Pachter ▴ 660
3
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1
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2.9k
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Comment: C: Which bias flags to run with Salmon before DESeq2 analysis?
updated 3.8 years ago by 38k • written 3.8 years ago by ▴ 660
2
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0
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2.6k
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Answer: A: Dealing with 1000's of demultiplexed fastq files
3.8 years ago by Lior Pachter ▴ 660
1
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0
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4.0k
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Answer: A: UMI Tools Dedup
3.8 years ago by Lior Pachter ▴ 660
0
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0
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7.7k
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Answer: A: Hardware requirement for RNA-seq
4.0 years ago by Lior Pachter ▴ 660
0
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1
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1.2k
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Comment: C: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
4.6 years ago by Lior Pachter ▴ 660
1
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1
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15k
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Comment: C: RNA-Seq analysis using STAR and Salmon
5.5 years ago by Lior Pachter ▴ 660
1
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2
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3.2k
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Comment: C: Can anyone suggest a RShiny app for displaying RNA-seq results online
6.7 years ago by Lior Pachter ▴ 660
0
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0
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3.1k
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Comment: C: Estimating RPKM or TPM in RNA-Seq data
7.0 years ago by Lior Pachter ▴ 660
0
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1
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4.0k
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Comment: C: RNA-Seq for DE analysis
7.0 years ago by Lior Pachter ▴ 660
2
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1
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4.0k
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Comment: C: RNA-Seq for DE analysis
7.0 years ago by Lior Pachter ▴ 660
0
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0
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3.1k
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Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
7.0 years ago by Lior Pachter ▴ 660
0
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0
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20k
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Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
7.0 years ago by Lior Pachter ▴ 660
0
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0
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9.3k
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Comment: C: Kallisto New RNA-seq quantification method discussion
7.0 years ago by Lior Pachter ▴ 660
1
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0
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9.3k
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Comment: C: Kallisto New RNA-seq quantification method discussion
7.0 years ago by Lior Pachter ▴ 660
0
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0
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9.3k
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Comment: C: Kallisto New RNA-seq quantification method discussion
7.0 years ago by Lior Pachter ▴ 660
0
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0
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9.3k
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Comment: C: Kallisto New RNA-seq quantification method discussion
7.0 years ago by Lior Pachter ▴ 660
1
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0
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3.0k
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Answer: A: Assembly of transcripts of specific genes from the RNA-seq data
7.5 years ago by Lior Pachter ▴ 660
1
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0
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8.9k
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Comment: Comment: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 6 months ago by 38k • written 7.6 years ago by ▴ 660
1
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1
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2.6k
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Answer: A: Differential expression in edgeR with cuffdiff count output
7.6 years ago by Lior Pachter ▴ 660
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