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Cutting Edge Single Cell Analysis Methods?
RNA-Seq single-cell
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 760
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10.0k
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Answer: A: How to get list of all GO terms in each ontology
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 760
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Comment: C: Convert Expression Set into a Matrix or Data Frame
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 760
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Answer: A: STAR Aligner minimum read-length
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 760
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Answer: A: Calculating weights for a Cluster matrix
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 760
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Comment: C: Linear Model Design Formula for "Complex" Experimental design
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 760
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Answer: A: DESEeq differential analysis after PEER normalization
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 760
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4.0k
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Answer: Answer: how to obtain the locations of a exon and its corresponding peptide from a speci
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 760
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Comment: C: removing the genes with 0 standard deviation
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 760
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Answer: A: removing the genes with 0 standard deviation
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 760
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Answer: A: PLINK: removing SNPs missing in all samples
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 760
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Answer: Answer: Clustering differences between heatmap.2 and pheatmap
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 760
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5.5k
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Answer: A: PEER normalization after DESeq run
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 760
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9.3k
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Answer: Answer: Solved (How to create "trait data" file for WGCNA )
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
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1.8k
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Comment: C: Bioinformatician for a medical epigenetics project (Freiburg, Germany)
8.6 years ago by informatics bot ▴ 760
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3.4k
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Answer: A: PCA from kallisto output
8.8 years ago by informatics bot ▴ 760
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Comment: C: I am really pissed off by the bioinformatics software world. Do/can we have a be
9.2 years ago by informatics bot ▴ 760
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9.5k
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Comment: C: I am really pissed off by the bioinformatics software world. Do/can we have a be
9.2 years ago by informatics bot ▴ 760
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Answer: A: What is the difference between gene signature , disease signature and drug signa
9.3 years ago by informatics bot ▴ 760
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Answer: A: Getting rid of noise in gene expression
9.3 years ago by informatics bot ▴ 760
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Answer: A: IPA Core analysis
9.3 years ago by informatics bot ▴ 760
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6.8k
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Comment: C: WGCNA maxBlockSize limit
9.3 years ago by informatics bot ▴ 760
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6.8k
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Comment: C: WGCNA maxBlockSize limit
9.3 years ago by informatics bot ▴ 760
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6.8k
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Comment: C: WGCNA maxBlockSize limit
9.3 years ago by informatics bot ▴ 760
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Comment: C: PhD Student in Bioinformatics/Biostatistics at MPI Infection Biology, Berlin
9.4 years ago by informatics bot ▴ 760
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Comment: C: Error When Reading GEO Series Matrix File Using GEOquery in R
9.5 years ago by informatics bot ▴ 760
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3.3k
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Answer: A: normalized input data for GAGE (R) - log-transformed or not?
9.5 years ago by informatics bot ▴ 760
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Comment: C: seqinfo in R
9.5 years ago by informatics bot ▴ 760
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2.7k
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Comment: C: seqinfo in R
9.5 years ago by informatics bot ▴ 760
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Comment: C: How to run rlog from Deseq2 in R on HTseq counts from RNAseq data
9.5 years ago by informatics bot ▴ 760
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1
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6.6k
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Answer: A: How to run rlog from Deseq2 in R on HTseq counts from RNAseq data
9.5 years ago by informatics bot ▴ 760
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1
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4.6k
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Comment: C: What is Pathway Analysis?
9.6 years ago by informatics bot ▴ 760
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5.3k
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Comment: C: WGCNA module significance ?
9.6 years ago by informatics bot ▴ 760
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5.3k
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Comment: C: WGCNA module significance ?
9.6 years ago by informatics bot ▴ 760
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5.3k
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Answer: A: WGCNA module significance ?
9.6 years ago by informatics bot ▴ 760
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3.9k
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Answer: A: Adding headers/ identifiers to List of lists in R
9.6 years ago by informatics bot ▴ 760
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4.5k
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Comment: C: RNASeq with mixed tissues
9.6 years ago by informatics bot ▴ 760
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Answer: A: RNASeq with mixed tissues
9.6 years ago by informatics bot ▴ 760
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Comment: Comment: Analysing Microarray Data In Bioconductor
updated 2.8 years ago by 45k • written 9.6 years ago by ▴ 760
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Answer: A: Is there a GTEX trans-eQTL analysis?
9.7 years ago by informatics bot ▴ 760
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5.2k
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Comment: C: R software error
9.7 years ago by informatics bot ▴ 760
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5.2k
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Comment: C: R software error
9.7 years ago by informatics bot ▴ 760
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22k
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Comment: C: GO analysis: DAVID vs GREAT vs GOrilla
9.7 years ago by informatics bot ▴ 760
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Bioconductor packages/methods for identifying disease subtypes
RNA-Seq R complex-disease
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
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6.1k
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Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data.
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
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Comment: C: WGCNA - problems picking a suitable power
9.7 years ago by informatics bot ▴ 760
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6.1k
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Comment: C: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data.
9.7 years ago by informatics bot ▴ 760
0
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0
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9.3k
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Comment: Comment: Solved (How to create "trait data" file for WGCNA )
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
0
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1
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9.3k
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Comment: Comment: Solved (How to create "trait data" file for WGCNA )
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
0
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0
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9.3k
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Comment: Comment: Solved (How to create "trait data" file for WGCNA )
updated 3.3 years ago by 45k • written 9.7 years ago by ▴ 760
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