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36
votes
16
replies
14k
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8 follow
How to identify 16s sequences from binning data(contigs)?
genome
Assembly
sequence
blast
updated 10 months ago by
Kermit
▴ 90 • written 8.6 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
11k
views
Comment:
C: How to calculate FPKM values of interested gene
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
6.1k
views
Answer:
A: How to get the abundance of genes in metagenomes from MG RAST
7.9 years ago by
liuyifan2014
▴ 110
3
votes
2
replies
4.5k
views
Should I use DNA or Protein sequence to build a HMM profile?
genome
hmm
gene
protein
DNA
updated 7.9 years ago by
oli4morelle
▴ 20 • written 7.9 years ago by
liuyifan2014
▴ 110
1
vote
1
reply
3.2k
views
Is it necessary to increase annealing T during PCR when there are adaptors in primers?
illumina
16S
PCR
Tm
primer
updated 8.2 years ago by
Anima Mundi
★ 2.9k • written 8.2 years ago by
liuyifan2014
▴ 110
5
votes
4
replies
3.1k
views
Is it ok to map RNA-seq reads on prokaryotic reference genome with bowtie2 ?
RNA-Seq
alignment
genome
updated 8.3 years ago by
mark.ziemann
★ 1.9k • written 8.3 years ago by
liuyifan2014
▴ 110
1
vote
1
reply
2.8k
views
Shall we move duplicated reads from metagenomic data?
sequencing
next-gen
gene
PRINSEQ
duplicates
8.5 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
1.7k
views
Is estimated coverage of Nonpareil reliable?
software error
metagenomic
nonpareil
coverage
8.6 years ago by
liuyifan2014
▴ 110
0
votes
1
reply
14k
views
Comment:
C: How to identify 16s sequences from binning data(contigs)?
8.6 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
14k
views
Comment:
C: How to identify 16s sequences from binning data(contigs)?
8.6 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
14k
views
Comment:
C: How to identify 16s sequences from binning data(contigs)?
8.6 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
1.4k
views
Looking for tools for taxonomic identification of 16s(part) using sencodary structure information?
sequence
16s
secondary structure
8.6 years ago by
liuyifan2014
▴ 110
0
votes
1
reply
14k
views
Comment:
C: How to identify 16s sequences from binning data(contigs)?
8.6 years ago by
liuyifan2014
▴ 110
0
votes
1
reply
14k
views
Comment:
C: How to identify 16s sequences from binning data(contigs)?
8.6 years ago by
liuyifan2014
▴ 110
0
votes
0
replies
2.5k
views
How to reconstruct 16s rRNA sequences from illumina metagenomic shortgun data?
illumina
16s
metagenomic
8.6 years ago by
liuyifan2014
▴ 110
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