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Comment: C: DESeq2 model design
6.6 years ago by Carlo Yague 9.0k
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3.2k
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Answer: A: DESeq2 model design
6.6 years ago by Carlo Yague 9.0k
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13k
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Comment: C: Extract reads from bam/sam files using read id
6.7 years ago by Carlo Yague 9.0k
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21k
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Comment: C: featureCounts strand specificity
6.9 years ago by Carlo Yague 9.0k
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1
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1.5k
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Comment: C: weird number in log2FC
7.0 years ago by Carlo Yague 9.0k
2
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1
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9.7k
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Answer: A: Antisense transcription from strand specific RNA-seq
7.0 years ago by Carlo Yague 9.0k
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7.5k
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Comment: C: Extract sequences from a FASTA file using a gtf file
7.0 years ago by Carlo Yague 9.0k
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7.5k
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Answer: A: Extract sequences from a FASTA file using a gtf file
7.0 years ago by Carlo Yague 9.0k
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19k
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Comment: C: Orientation of PE reads a review of --fr --ff and --rf meanings
7.1 years ago by Carlo Yague 9.0k
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1
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19k
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Comment: C: Orientation of PE reads a review of --fr --ff and --rf meanings
7.1 years ago by Carlo Yague 9.0k
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5.4k
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Comment: C: Using samtools sort to convert .sam files to .bam files
7.1 years ago by Carlo Yague 9.0k
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1
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5.1k
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Comment: C: Compatibility between my reference genome and GTF file
7.1 years ago by Carlo Yague 9.0k
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1.8k
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Answer: A: Seeking ideas and guidance for an undergraduate project
7.1 years ago by Carlo Yague 9.0k
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1
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5.5k
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Comment: C: hisa2 warning message dunring alignment of fasta file with reference genome
7.1 years ago by Carlo Yague 9.0k
4
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1
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5.5k
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Comment: C: hisa2 warning message dunring alignment of fasta file with reference genome
7.1 years ago by Carlo Yague 9.0k
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0
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2.3k
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Comment: C: Proper design for DESeq2 and other RNAseq general questions
7.1 years ago by Carlo Yague 9.0k
0
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1
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2.3k
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Comment: C: Proper design for DESeq2 and other RNAseq general questions
7.1 years ago by Carlo Yague 9.0k
1
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0
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2.6k
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Comment: C: RNAseq analysis with very close species
7.1 years ago by Carlo Yague 9.0k
1
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1
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2.6k
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Comment: C: RNAseq analysis with very close species
7.1 years ago by Carlo Yague 9.0k
5
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2
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2.4k
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Weird R behaviour with NAs in DESeq2 results
RNA-Seq R DESeq2 NA
updated 7.2 years ago by 45k • written 7.2 years ago by 9.0k
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2.4k
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Comment: C: Weird R behaviour with NAs in DESeq2 results
7.2 years ago by Carlo Yague 9.0k
1
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3.2k
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Comment: C: Bioinformatics experience in programming
7.2 years ago by Carlo Yague 9.0k
5
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1
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14k
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Answer: A: Calculating percentage of reads mapped to a reference genome
7.2 years ago by Carlo Yague 9.0k
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0
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1.8k
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Comment: C: How to process the raw reads from miRNA-seq
7.2 years ago by Carlo Yague 9.0k
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0
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3.1k
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Comment: C: RNA-seq analysis of virally infected cells
7.2 years ago by Carlo Yague 9.0k
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1
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3.1k
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Comment: C: RNA-seq analysis of virally infected cells
7.2 years ago by Carlo Yague 9.0k
4
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1
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3.1k
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Answer: A: RNA-seq analysis of virally infected cells
7.2 years ago by Carlo Yague 9.0k
7
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9.4k
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Answer: A: The bed12 format
7.3 years ago by Carlo Yague 9.0k
1
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1
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3.3k
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Answer: A: Is there a code to find consensus motif
7.3 years ago by Carlo Yague 9.0k
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0
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1.5k
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Comment: C: m6A RNA-seq using Smarter ,fastqc found many 'TTTTTTTTTTTTTTTTTTTTTTTTTTTTT' for
7.3 years ago by Carlo Yague 9.0k
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0
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6.6k
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Comment: C: Compute average score across multiple bed files
7.3 years ago by Carlo Yague 9.0k
1
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0
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6.6k
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Answer: A: Compute average score across multiple bed files
7.3 years ago by Carlo Yague 9.0k
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0
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3.4k
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Comment: C: Conversion of Fasta file
7.3 years ago by Carlo Yague 9.0k
2
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1
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3.4k
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Answer: C: Conversion of Fasta file
7.3 years ago by Carlo Yague 9.0k
3
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0
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2.2k
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Tool: SL-quant: finding splice-leader (SL) trans-splicing events in RNA-seq reads.
nematode RNA-Seq pipeline trans-splicing
updated 2.4 years ago by 45k • written 7.3 years ago by 9.0k
2
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4.2k
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Answer: A: RNASeq DGE : Kallisto-sleuth Vs Ballgown
7.3 years ago by Carlo Yague 9.0k
0
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1
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3.9k
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Comment: C: Difference in BAM coverage between bedtools output and IGV coverage track
7.3 years ago by Carlo Yague 9.0k
2
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0
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1.8k
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Comment: C: samtools stats typical ranges and explicit definitions
7.3 years ago by Carlo Yague 9.0k
1
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1
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2.4k
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Answer: A: Show RNASeq coverage distribution over transcript length
7.4 years ago by Carlo Yague 9.0k
1
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0
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1.4k
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Comment: C: Lists of ncRNAS for cow, yeast
7.4 years ago by Carlo Yague 9.0k
0
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1
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1.4k
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Answer: A: Lists of ncRNAS for cow, yeast
7.4 years ago by Carlo Yague 9.0k
0
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2
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3.3k
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Comment: C: Is it correct if we use htseq counts as raw read counts in DESEq2?
7.4 years ago by Carlo Yague 9.0k
0
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1
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5.2k
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Comment: C: DGE analysis using stranded and unstranded RNA-seq libraries.
7.4 years ago by Carlo Yague 9.0k
2
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0
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4.8k
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Comment: C: get identical number of read1 and read2 aligned
7.4 years ago by Carlo Yague 9.0k
2
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0
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4.8k
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Comment: C: get identical number of read1 and read2 aligned
7.4 years ago by Carlo Yague 9.0k
0
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0
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2.2k
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Answer: A: extract one-side unmapped reads from sam
7.4 years ago by Carlo Yague 9.0k
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0
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5.6k
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Comment: C: How to assess the Fold-change significance using a t-test in R?
7.4 years ago by Carlo Yague 9.0k
0
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0
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6.6k
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Comment: C: bowtie2 unmapped reads
7.4 years ago by Carlo Yague 9.0k
0
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1
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6.6k
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Comment: C: bowtie2 unmapped reads
7.4 years ago by Carlo Yague 9.0k
0
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0
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2.7k
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Comment: C: ChIP Seq poor mapping quality and strange fast QC result
7.4 years ago by Carlo Yague 9.0k
997 results • Page 10 of 20
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