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Comment: C: Mapping with tophat2 and setting a Tophat2 output directory?
9.5 years ago by Carlo Yague 9.0k
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7.0k
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Comment: C: Mapping with tophat2 and setting a Tophat2 output directory?
9.5 years ago by Carlo Yague 9.0k
0
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2
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7.0k
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Answer: A: Mapping with tophat2 and setting a Tophat2 output directory?
9.5 years ago by Carlo Yague 9.0k
0
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1
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4.9k
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Comment: C: I cannot read data into R (read.affy)
9.5 years ago by Carlo Yague 9.0k
1
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0
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4.9k
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Answer: A: I cannot read data into R (read.affy)
9.5 years ago by Carlo Yague 9.0k
1
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0
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4.2k
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Comment: C: only a few differential expressed genes
9.5 years ago by Carlo Yague 9.0k
1
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0
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4.2k
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Answer: A: only a few differential expressed genes
9.5 years ago by Carlo Yague 9.0k
4
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6
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2.6k
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Read alignments terminating at genomic positions.
alignment bam psi-seq sam samtools
9.6 years ago by Carlo Yague 9.0k
0
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0
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2.6k
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Comment: C: Read alignments terminating at genomic positions.
9.6 years ago by Carlo Yague 9.0k
0
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0
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3.1k
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Comment: C: DESeq2 inconsistent results
9.6 years ago by Carlo Yague 9.0k
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2.8k
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Comment: C: What are the best tools for mapping RNASeq paired-end data (HiSeq2000) for funga
9.6 years ago by Carlo Yague 9.0k
0
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1
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10k
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Answer: A: Force blast to align the whole query read
9.6 years ago by Carlo Yague 9.0k
0
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0
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10k
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Comment: C: Force blast to align the whole query read
9.6 years ago by Carlo Yague 9.0k
0
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1
reply
10k
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Comment: C: Force blast to align the whole query read
9.6 years ago by Carlo Yague 9.0k
0
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1
reply
10k
views
Comment: C: Force blast to align the whole query read
9.6 years ago by Carlo Yague 9.0k
2
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0
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2.5k
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Answer: A: Maximum Number of Gene in a DESeq2 and edgeR
9.6 years ago by Carlo Yague 9.0k
0
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0
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2.0k
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Answer: A: How to calculate the correlation or the p value of two groups of genes
9.6 years ago by Carlo Yague 9.0k
0
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0
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2.7k
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Comment: C: reference genome for 16S rDNA sequences in NGS analysis
9.6 years ago by Carlo Yague 9.0k
0
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0
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4.8k
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Answer: A: Filtering by FPKM, opinions and thoughts
9.6 years ago by Carlo Yague 9.0k
2
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0
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1.9k
views
Answer: A: Shortening Whole genome for Benchmarking
9.6 years ago by Carlo Yague 9.0k
1
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0
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3.4k
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Answer: A: Creating fasta files to BLAST- what's that fastest way
9.6 years ago by Carlo Yague 9.0k
1
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1
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3.4k
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Comment: C: Creating fasta files to BLAST- what's that fastest way
9.6 years ago by Carlo Yague 9.0k
0
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0
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3.5k
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Comment: C: How to decipher FPKM Values?
9.6 years ago by Carlo Yague 9.0k
1
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0
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3.5k
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Comment: C: How to decipher FPKM Values?
9.6 years ago by Carlo Yague 9.0k
0
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1
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3.5k
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Comment: C: How to decipher FPKM Values?
9.6 years ago by Carlo Yague 9.0k
3
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0
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9.8k
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Answer: A: MNase-seq Data Analysis and Processing
9.7 years ago by Carlo Yague 9.0k
1
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0
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29k
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Comment: C: Z-Score calculation by heatmap.2
9.7 years ago by Carlo Yague 9.0k
1
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1
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29k
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Comment: C: Z-Score calculation by heatmap.2
9.7 years ago by Carlo Yague 9.0k
0
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0
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3.1k
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Comment: Comment: calculate sample size for RNAseq experiment
updated 3.3 years ago by 45k • written 9.7 years ago by 9.0k
0
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1
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3.1k
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Answer: Answer: calculate sample size for RNAseq experiment
updated 3.3 years ago by 45k • written 9.7 years ago by 9.0k
1
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1
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2.2k
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Comment: C: Making a design matrix when the control has a different number of replicates?
9.8 years ago by Carlo Yague 9.0k
2
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0
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4.2k
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Answer: A: RNA-seq dedupe PCR contamination before or after mapping
9.8 years ago by Carlo Yague 9.0k
0
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0
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6.2k
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Answer: A: Cufflinks bias correction and DESEq2
9.8 years ago by Carlo Yague 9.0k
0
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0
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5.1k
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Comment: C: genomeCoverageBed for paired end reads
9.8 years ago by Carlo Yague 9.0k
0
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0
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16k
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Comment: C: Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
9.8 years ago by Carlo Yague 9.0k
0
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2
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5.1k
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Answer: A: genomeCoverageBed for paired end reads
9.8 years ago by Carlo Yague 9.0k
0
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0
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9.1k
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Comment: C: TPM or FPKM as input values for PCA and WGCNA?
9.8 years ago by Carlo Yague 9.0k
0
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1
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9.1k
views
Comment: C: TPM or FPKM as input values for PCA and WGCNA?
9.8 years ago by Carlo Yague 9.0k
0
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1
reply
5.1k
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Comment: C: Guided clustering using pheatmaps
9.8 years ago by Carlo Yague 9.0k
2
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0
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2.2k
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Answer: A: How to replace missing characters with "?" at the beginning and at the end of th
9.8 years ago by Carlo Yague 9.0k
0
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0
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2.7k
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Answer: A: How to go from a list of one or more GO identifiers to GO categories (e.g. respo
9.9 years ago by Carlo Yague 9.0k
0
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0
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2.1k
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Comment: C: Higher coverage when using genomic sequencing reads from a pool of individuals
9.9 years ago by Carlo Yague 9.0k
1
vote
1
reply
3.7k
views
Comment: C: Random seed in genomics analyses
9.9 years ago by Carlo Yague 9.0k
2
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1
reply
6.0k
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Answer: A: Varying Sample Size vs Read Depth, Read Length, and Single vs Paired end to opti
9.9 years ago by Carlo Yague 9.0k
0
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0
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5.8k
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Comment: C: HTSeq-count no feature is too high
9.9 years ago by Carlo Yague 9.0k
1
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1
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7.6k
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Comment: C: H3K4Me3 ChIP-Seq signal at promoter
9.9 years ago by Carlo Yague 9.0k
0
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0
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5.4k
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Comment: C: cufflinks and average FPKM
10.0 years ago by Carlo Yague 9.0k
0
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1
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5.4k
views
Comment: C: cufflinks and average FPKM
10.0 years ago by Carlo Yague 9.0k
2
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0
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3.4k
views
Comment: C: Differential expression analysis of transcriptome data
10.0 years ago by Carlo Yague 9.0k
0
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1
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5.4k
views
Comment: C: cufflinks and average FPKM
10.0 years ago by Carlo Yague 9.0k
997 results • Page 19 of 20
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