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Answer: Answer: calculate nucleotides frequencies from mapped reads in a BAM file
4.0 years ago by Carlo Yague 9.0k
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1.5k
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Answer: Answer: How should I deal with my RNAseq result with high % of mutiple aligned reads?
4.0 years ago by Carlo Yague 9.0k
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9.0k
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Comment: Comment: Should I buy a new apple M1-max with 64Gb Ram for single cell RNA seq analysis?
4.0 years ago by Carlo Yague 9.0k
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4.5k
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Comment: Comment: Visualiation of samtools depth output in a plot
4.0 years ago by Carlo Yague 9.0k
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3.0k
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Comment: Comment: why those reads don't contain 0x2
4.0 years ago by Carlo Yague 9.0k
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3.0k
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Answer: Answer: why those reads don't contain 0x2
4.0 years ago by Carlo Yague 9.0k
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1
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3.0k
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Comment: Comment: why those reads don't contain 0x2
4.0 years ago by Carlo Yague 9.0k
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1.0k
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Answer: Answer: Consensus on poly-a selected lncRNAs for differential expression analysis
4.1 years ago by Carlo Yague 9.0k
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2
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2.5k
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Answer: Answer: bowtie2 mapping qualities of 0
2.3 years ago by Carlo Yague 9.0k
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3.3k
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Comment: Comment: Count strand-specific 5' / 3' coverage across whole genome for paired-end fragme
4.1 years ago by Carlo Yague 9.0k
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3.8k
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Comment: Comment: PDB to FASTA
4.1 years ago by Carlo Yague 9.0k
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4.2k
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Comment: Comment: Best tools for miRNA target prediction
4.1 years ago by Carlo Yague 9.0k
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1
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4.2k
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Comment: Comment: Best tools for miRNA target prediction
4.1 years ago by Carlo Yague 9.0k
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1
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3.8k
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Comment: Comment: PDB to FASTA
4.1 years ago by Carlo Yague 9.0k
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2
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2.2k
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Comment: Comment: Why my reads mapping rate extremely low
4.1 years ago by Carlo Yague 9.0k
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2.0k
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Comment: Comment: adding Gene Name to my bed file
4.1 years ago by Carlo Yague 9.0k
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1
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4.2k
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Comment: Comment: Best tools for miRNA target prediction
4.1 years ago by Carlo Yague 9.0k
2
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1
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4.2k
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Answer: Answer: Best tools for miRNA target prediction
4.1 years ago by Carlo Yague 9.0k
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1
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2.2k
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Answer: Answer: Using HTSeq-count for paired-end data but unsorted by SAMTOOLS
4.1 years ago by Carlo Yague 9.0k
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0
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13k
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Comment: Comment: ANOVA for RNA-seq data?
4.2 years ago by Carlo Yague 9.0k
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0
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13k
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Comment: Comment: ANOVA for RNA-seq data?
4.2 years ago by Carlo Yague 9.0k
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1
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2.2k
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Comment: Comment: How to get the coverage information in chip seq for TSS and genebody
4.2 years ago by Carlo Yague 9.0k
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1
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2.2k
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Comment: Comment: How to get the coverage information in chip seq for TSS and genebody
4.2 years ago by Carlo Yague 9.0k
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1
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2.2k
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Answer: Answer: How to get the coverage information in chip seq for TSS and genebody
4.2 years ago by Carlo Yague 9.0k
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0
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2.0k
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Comment: Comment: Is removing strand information when obtaining intergenic regions from GRanges ne
4.2 years ago by Carlo Yague 9.0k
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1.5k
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Answer: Answer: Is it a good idea to plot a volcano plot starting at position x =1
4.2 years ago by Carlo Yague 9.0k
3
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1
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2.0k
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Answer: Answer: Is removing strand information when obtaining intergenic regions from GRanges ne
4.2 years ago by Carlo Yague 9.0k
2
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1
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3.0k
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Answer: Answer: Download bigWig files of publicly available ChIP-seq samples
4.2 years ago by Carlo Yague 9.0k
2
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0
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5.5k
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Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
4.2 years ago by Carlo Yague 9.0k
1
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0
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800
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Comment: Comment: How to make the distrubution of DEGs using RNAseq data
4.2 years ago by Carlo Yague 9.0k
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2.7k
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Comment: Comment: same padj for all the genes after DEseq analysis
4.2 years ago by Carlo Yague 9.0k
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2.7k
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Answer: Answer: same padj for all the genes after DEseq analysis
4.2 years ago by Carlo Yague 9.0k
3
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0
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2.6k
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Comment: Comment: Flipping a DNA sequence (not reverse complementing) using command line/samtools?
4.2 years ago by Carlo Yague 9.0k
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1
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2.7k
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Comment: Comment: same padj for all the genes after DEseq analysis
4.2 years ago by Carlo Yague 9.0k
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1
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3.4k
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Comment: Comment: How to consider batch effect and multiple variable to identify differential gene
4.2 years ago by Carlo Yague 9.0k
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1
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3.4k
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Comment: Comment: How to consider batch effect and multiple variable to identify differential gene
4.2 years ago by Carlo Yague 9.0k
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0
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1.9k
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Comment: Comment: How to create a BED12 file defining UTR sequences
4.2 years ago by Carlo Yague 9.0k
0
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1
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1.9k
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Comment: Comment: How to create a BED12 file defining UTR sequences
4.2 years ago by Carlo Yague 9.0k
0
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0
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1.9k
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Comment: Comment: How to create a BED12 file defining UTR sequences
4.2 years ago by Carlo Yague 9.0k
1
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0
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1.9k
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Comment: Comment: Downloading WGBS sequencing reads for cancer sample and healthy sample
4.2 years ago by Carlo Yague 9.0k
2
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0
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792
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Comment: Comment: Bioinformatics application on data
4.2 years ago by Carlo Yague 9.0k
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0
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2.2k
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Comment: Comment: GEO submission when I have raw data in SRA
4.2 years ago by Carlo Yague 9.0k
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1
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3.2k
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Comment: Comment: problem with no replicate data analysis
4.3 years ago by Carlo Yague 9.0k
1
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1
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3.8k
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Comment: Comment: the --fraction option of featureCounts
4.3 years ago by Carlo Yague 9.0k
1
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1
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1.4k
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Answer: Answer: RNASEQ differential expression of paired samples
updated 4.3 years ago by 90k • written 4.3 years ago by 9.0k
2
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1
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3.8k
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Answer: Answer: the --fraction option of featureCounts
4.3 years ago by Carlo Yague 9.0k
1
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0
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1.4k
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Comment: Comment: Using psi-blast to obtain all members of the protein family
4.3 years ago by Carlo Yague 9.0k
1
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1
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1.4k
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Comment: Comment: Using psi-blast to obtain all members of the protein family
4.3 years ago by Carlo Yague 9.0k
3
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0
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2.0k
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Answer: Answer: Orthology, sequence similarity, and conservation of function
4.3 years ago by Carlo Yague 9.0k
3
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1
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1.8k
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Comment: Comment: DESeq2 - design matrix and interaction terms
4.3 years ago by Carlo Yague 9.0k
997 results • Page 4 of 20
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