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Answer: A: featureCounts: strandedness problem/inconsistency
4.9 years ago by Carlo Yague 9.0k
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Comment: C: How to count the number of alignments in a bam file without using samtools?
4.9 years ago by Carlo Yague 9.0k
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2.1k
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Comment: C: How to count the number of alignments in a bam file without using samtools?
4.9 years ago by Carlo Yague 9.0k
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2.1k
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Comment: A: How to count the number of alignments in a bam file without using samtools?
4.9 years ago by Carlo Yague 9.0k
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2.1k
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Comment: C: How to count the number of alignments in a bam file without using samtools?
4.9 years ago by Carlo Yague 9.0k
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1.8k
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Comment: C: How is it possible to recognize replicates?
4.9 years ago by Carlo Yague 9.0k
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1.8k
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Comment: C: How is it possible to recognize replicates?
4.9 years ago by Carlo Yague 9.0k
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1.8k
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Comment: C: How is it possible to recognize replicates?
4.9 years ago by Carlo Yague 9.0k
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1.8k
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Comment: C: How is it possible to recognize replicates?
4.9 years ago by Carlo Yague 9.0k
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1.8k
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Answer: A: How is it possible to recognize replicates?
4.9 years ago by Carlo Yague 9.0k
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Answer: A: What could be the cause of different levels of binding in ChIP-Seq Input samples
5.0 years ago by Carlo Yague 9.0k
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3.5k
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Comment: C: Should I do P-value adjustment in this case?
5.0 years ago by Carlo Yague 9.0k
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3.5k
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Answer: C: Should I do P-value adjustment in this case?
5.0 years ago by Carlo Yague 9.0k
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Answer: A: Can we run FastQC and BWA on .fastq.bz2 files
5.0 years ago by Carlo Yague 9.0k
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1.7k
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Comment: C: RNA-seq raw data lost
5.0 years ago by Carlo Yague 9.0k
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3.0k
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Comment: C: ChIP-seq Motif Enrichment
5.0 years ago by Carlo Yague 9.0k
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3.0k
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Comment: C: ChIP-seq Motif Enrichment
5.0 years ago by Carlo Yague 9.0k
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4.5k
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Comment: C: Reads mapped on wrong strand
5.0 years ago by Carlo Yague 9.0k
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4.5k
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Comment: C: Reads mapped on wrong strand
5.0 years ago by Carlo Yague 9.0k
2
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1
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3.0k
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Comment: C: ChIP-seq Motif Enrichment
5.0 years ago by Carlo Yague 9.0k
2
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1
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3.1k
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Comment: C: Why some mapped reads are are not mapped completely?
5.0 years ago by Carlo Yague 9.0k
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4.9k
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Comment: C: Correlation in RNAseq
5.0 years ago by Carlo Yague 9.0k
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4.9k
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Answer: A: Correlation in RNAseq
5.0 years ago by Carlo Yague 9.0k
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2.0k
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Comment: C: FeatureCounts, zero counts from Hisat2 alignment
5.1 years ago by Carlo Yague 9.0k
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3.1k
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Comment: C: Does PCA results impact on DESeq2 design choices?
5.1 years ago by Carlo Yague 9.0k
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2.0k
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Comment: C: Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
5.1 years ago by Carlo Yague 9.0k
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6.6k
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Comment: C: Using rnaseq reference sample across batches
5.1 years ago by Carlo Yague 9.0k
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1
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2.7k
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Comment: C: Error: Empty BAM file in DANPOS3
5.2 years ago by Carlo Yague 9.0k
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7.6k
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Comment: C: RNA-Seq Analysis: To sort or not to Sort?
5.2 years ago by Carlo Yague 9.0k
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1
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2.1k
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Comment: C: DESeq2-Differential expression Number limitation
5.2 years ago by Carlo Yague 9.0k
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2
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2.1k
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Comment: C: DESeq2-Differential expression Number limitation
5.2 years ago by Carlo Yague 9.0k
2
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1
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3.2k
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Answer: A: Reliability of gene expression with low exonic counts in bulk RNA-seq data
5.2 years ago by Carlo Yague 9.0k
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1
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1.9k
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Answer: A: long-non coding RNA and protein-coding genes correlation
5.5 years ago by Carlo Yague 9.0k
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1
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1.9k
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Comment: C: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
5.6 years ago by Carlo Yague 9.0k
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1
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2.0k
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Comment: C: Unable to perform merging through cuffmerge
5.6 years ago by Carlo Yague 9.0k
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1
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2.0k
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Comment: C: Unable to perform merging through cuffmerge
5.6 years ago by Carlo Yague 9.0k
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1
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2.0k
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Comment: C: Unable to perform merging through cuffmerge
5.6 years ago by Carlo Yague 9.0k
1
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3.3k
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Comment: C: Differential gene expression analysis by DESeq2
5.6 years ago by Carlo Yague 9.0k
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1.9k
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Comment: C: How to get multi mappers from bowtie 1
5.6 years ago by Carlo Yague 9.0k
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1.2k
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Comment: C: bam file: get date that alignment was run
5.6 years ago by Carlo Yague 9.0k
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1
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2.8k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
5.7 years ago by Carlo Yague 9.0k
1
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1
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2.8k
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Answer: C: How to blastn a very short query sequence? Identifying telomeres in assembly
5.7 years ago by Carlo Yague 9.0k
1
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1
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2.7k
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Comment: C: Bedtools intersect/bcftools annotate dublicate the SNPs
5.7 years ago by Carlo Yague 9.0k
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2
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2.7k
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Answer: A: Bedtools intersect/bcftools annotate dublicate the SNPs
5.7 years ago by Carlo Yague 9.0k
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2.5k
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Answer: A: Removing outliers from bigwig files
5.7 years ago by Carlo Yague 9.0k
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0
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4.3k
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Answer: A: Difference in number of reads in tophat and htseq-count outputs
updated 5.9 years ago by 45k • written 9.9 years ago by 9.0k
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5.7k
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Comment: C: count reads in ambiguous regions for both features
updated 5.9 years ago by 45k • written 10.0 years ago by 9.0k
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5.7k
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Comment: C: count reads in ambiguous regions for both features
updated 5.9 years ago by 45k • written 9.9 years ago by 9.0k
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0
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3.3k
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Comment: C: How to check if a gene is comprised in a certain interval? with R
updated 5.9 years ago by 45k • written 10.0 years ago by 9.0k
1
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3.3k
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Answer: A: How to check if a gene is comprised in a certain interval? with R
updated 5.9 years ago by 45k • written 10.0 years ago by 9.0k
997 results • Page 8 of 20
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