Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.9k
views
Answer: A: Splicing affected DE genes
updated 5.9 years ago by 45k • written 10.0 years ago by 9.0k
0
votes
0
replies
1.4k
views
Comment: C: Combining two BED files based on shared criteria
5.9 years ago by Carlo Yague 9.0k
2
votes
1
reply
1.7k
views
Comment: C: DESeq2 design and Batch effects
5.9 years ago by Carlo Yague 9.0k
1
vote
1
reply
1.4k
views
Answer: A: Input for DESEQ2 (after featurecounts)
6.0 years ago by Carlo Yague 9.0k
1
vote
0
replies
2.4k
views
Comment: C: Tophat2 RNA seq mapping
6.0 years ago by Carlo Yague 9.0k
0
votes
0
replies
2.4k
views
Comment: C: Tophat2 RNA seq mapping
6.0 years ago by Carlo Yague 9.0k
3
votes
1
reply
3.1k
views
Answer: A: trimming or masking ?
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
3
votes
1
reply
1.8k
views
Answer: A: What should be the frequency of a Single Nucleotide variation to be called as pa
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
1
vote
1
reply
2.2k
views
Answer: A: SRA sequence, FastQC, RNA seeq
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
0
votes
0
replies
1.5k
views
Comment: C: Finding the best alignment from a paternal and maternal BAM file
6.0 years ago by Carlo Yague 9.0k
2
votes
1
reply
1.5k
views
Answer: A: Finding the best alignment from a paternal and maternal BAM file
6.0 years ago by Carlo Yague 9.0k
1
vote
2
replies
6.4k
views
Comment: C: using featureCounts to have raw counts of the reads
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
1
vote
1
reply
6.4k
views
Comment: C: using featureCounts to have raw counts of the reads
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
0
votes
0
replies
2.6k
views
Comment: C: RNA-Seq Strand Bais
updated 6.0 years ago by 45k • written 10.1 years ago by 9.0k
3
votes
0
replies
2.8k
views
Answer: A: Using ColSums vs sizeFactors in read count normalization
6.0 years ago by Carlo Yague 9.0k
0
votes
1
reply
3.8k
views
Comment: C: check deseq2 design please
6.0 years ago by Carlo Yague 9.0k
1
vote
2
replies
1.9k
views
Answer: A: How to get multi mappers from bowtie 1
6.0 years ago by Carlo Yague 9.0k
0
votes
0
replies
3.8k
views
Answer: A: Getting uniquely aligned properly paired reads
6.0 years ago by Carlo Yague 9.0k
0
votes
0
replies
1.8k
views
Comment: C: Couting number of similar reads in sam file and output in bed file?
6.0 years ago by Carlo Yague 9.0k
0
votes
0
replies
1.8k
views
Comment: C: Couting number of similar reads in sam file and output in bed file?
6.0 years ago by Carlo Yague 9.0k
1
vote
0
replies
1.8k
views
Comment: C: Couting number of similar reads in sam file and output in bed file?
6.0 years ago by Carlo Yague 9.0k
3
votes
2
replies
1.8k
views
Answer: A: Couting number of similar reads in sam file and output in bed file?
6.0 years ago by Carlo Yague 9.0k
0
votes
1
reply
3.3k
views
Comment: C: Failure in extracting reads from bam file due to unknown reference
6.0 years ago by Carlo Yague 9.0k
0
votes
1
reply
1.6k
views
Comment: C: bowtie2 -all ... multiple alignment Chip-seq
6.0 years ago by Carlo Yague 9.0k
1
vote
0
replies
2.7k
views
Answer: A: Advice on DE analysis of mouse and human merged RNA-seq data
6.0 years ago by Carlo Yague 9.0k
0
votes
0
replies
7.1k
views
Comment: C: cutoff for expressed genes in DESeq2
6.1 years ago by Carlo Yague 9.0k
0
votes
0
replies
5.3k
views
Comment: C: SSD or HHD for genome analysis
6.1 years ago by Carlo Yague 9.0k
2
votes
2
replies
1.3k
views
Comment: C: Log2FC at 2 time point
6.1 years ago by Carlo Yague 9.0k
2
votes
0
replies
8.6k
views
Comment: C: Count matrix from bigwig files - Application
6.1 years ago by Carlo Yague 9.0k
0
votes
1
reply
5.3k
views
Comment: C: SSD or HHD for genome analysis
6.1 years ago by Carlo Yague 9.0k
0
votes
0
replies
1.7k
views
Comment: C: Bam QC, GC content
6.2 years ago by Carlo Yague 9.0k
0
votes
0
replies
2.6k
views
Comment: C: Gene set enrichment analysis using a curated gene list and cluster DE genes
6.3 years ago by Carlo Yague 9.0k
0
votes
1
reply
2.6k
views
Comment: C: Gene set enrichment analysis using a curated gene list and cluster DE genes
6.3 years ago by Carlo Yague 9.0k
2
votes
1
reply
2.2k
views
Comment: C: Is their a way to update HtSeq without uninstalling it?
6.3 years ago by Carlo Yague 9.0k
4
votes
1
reply
2.8k
views
Comment: C: extract unique sequences on bam file
6.3 years ago by Carlo Yague 9.0k
2
votes
2
replies
15k
views
Comment: C: Best-suited unit of expression to perform between-sample comparison
6.3 years ago by Carlo Yague 9.0k
1
vote
1
reply
5.9k
views
Comment: C: HIsat2 bam and summary output - multiple output file type
6.3 years ago by Carlo Yague 9.0k
1
vote
1
reply
5.9k
views
Answer: A: HIsat2 bam and summary output - multiple output file type
6.3 years ago by Carlo Yague 9.0k
0
votes
0
replies
3.6k
views
Comment: C: differences between bwa-mem paired and single reads
6.3 years ago by Carlo Yague 9.0k
0
votes
0
replies
6.3k
views
Comment: C: Very low percentage of assigned reads using featureCounts
6.3 years ago by Carlo Yague 9.0k
2
votes
1
reply
6.3k
views
Answer: A: Very low percentage of assigned reads using featureCounts
6.3 years ago by Carlo Yague 9.0k
1
vote
1
reply
3.6k
views
Comment: C: differences between bwa-mem paired and single reads
6.3 years ago by Carlo Yague 9.0k
0
votes
0
replies
15k
views
Comment: C: Best-suited unit of expression to perform between-sample comparison
6.4 years ago by Carlo Yague 9.0k
1
vote
1
reply
10k
views
Answer: A: DESeq2 converting numeric to factor for unknown reason
6.4 years ago by Carlo Yague 9.0k
6
votes
2
replies
3.3k
views
Answer: A: Differential gene expression analysis by DESeq2
6.4 years ago by Carlo Yague 9.0k
3
votes
0
replies
6.2k
views
Answer: A: Batch effect, how to create a model matrix
6.5 years ago by Carlo Yague 9.0k
0
votes
0
replies
4.3k
views
Comment: C: Subsampling one bamfile multiple times?
6.5 years ago by Carlo Yague 9.0k
1
vote
1
reply
5.7k
views
Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
6.6 years ago by Carlo Yague 9.0k
1
vote
2
replies
4.3k
views
Answer: C: Subsampling one bamfile multiple times?
6.6 years ago by Carlo Yague 9.0k
2
votes
1
reply
4.3k
views
Comment: C: Subsampling one bamfile multiple times with 1x, 2x, 5x coverage?
6.6 years ago by Carlo Yague 9.0k
997 results • Page 9 of 20
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6