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0
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716
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Answer:
Answer: Official/centralized/designated genetic/biological knowledge graph?
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.1k
views
Answer:
Answer: Gene list for GO enrichment after DESeq2. Should I use a gene list of differenti
2.5 years ago by
Carlo Yague
8.7k
2
votes
1
reply
1.6k
views
Answer:
Answer: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.5 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.1k
views
Answer:
Answer: Clarification request isoforms, redundancy, ortholog, paralog , divergence , con
2.5 years ago by
Carlo Yague
8.7k
0
votes
1
reply
946
views
Answer:
Answer: Transcript assemblers from RNA-seq reads - a request for tool recommendation
2.5 years ago by
Carlo Yague
8.7k
3
votes
1
reply
5.6k
views
Answer:
Answer: Samfiles
2.5 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.6k
views
Answer:
Answer: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by
Carlo Yague
8.7k
2
votes
0
replies
902
views
Answer:
Answer: How should I deal with my RNAseq result with high % of mutiple aligned reads?
2.5 years ago by
Carlo Yague
8.7k
2
votes
1
reply
1.8k
views
Answer:
Answer: why those reads don't contain 0x2
2.5 years ago by
Carlo Yague
8.7k
2
votes
0
replies
619
views
Answer:
Answer: Consensus on poly-a selected lncRNAs for differential expression analysis
2.5 years ago by
Carlo Yague
8.7k
2
votes
2
replies
1.3k
views
Answer:
Answer: bowtie2 mapping qualities of 0
9 months ago by
Carlo Yague
8.7k
2
votes
1
reply
2.0k
views
Answer:
Answer: Best tools for miRNA target prediction
2.6 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.4k
views
Answer:
Answer: Using HTSeq-count for paired-end data but unsorted by SAMTOOLS
2.6 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.4k
views
Answer:
Answer: How to get the coverage information in chip seq for TSS and genebody
2.7 years ago by
Carlo Yague
8.7k
2
votes
0
replies
869
views
Answer:
Answer: Is it a good idea to plot a volcano plot starting at position x =1
2.7 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.3k
views
Answer:
Answer: Is removing strand information when obtaining intergenic regions from GRanges ne
2.7 years ago by
Carlo Yague
8.7k
2
votes
1
reply
1.6k
views
Answer:
Answer: Download bigWig files of publicly available ChIP-seq samples
2.7 years ago by
Carlo Yague
8.7k
2
votes
0
replies
3.4k
views
Answer:
Answer: From amino acid sequence to DNA sequence using Reverse Translate software
2.7 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.7k
views
Answer:
Answer: same padj for all the genes after DEseq analysis
2.7 years ago by
Carlo Yague
8.7k
1
vote
1
reply
957
views
Answer:
Answer: RNASEQ differential expression of paired samples
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
Carlo Yague
8.7k
2
votes
1
reply
2.4k
views
Answer:
Answer: the --fraction option of featureCounts
2.7 years ago by
Carlo Yague
8.7k
3
votes
0
replies
1.1k
views
Answer:
Answer: Orthology, sequence similarity, and conservation of function
2.7 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.1k
views
Answer:
Answer: DESeq2 - design matrix and interaction terms
2.7 years ago by
Carlo Yague
8.7k
0
votes
1
reply
1.4k
views
Answer:
Answer: Interpretation of DESeq2 DE-analysis
2.7 years ago by
Carlo Yague
8.7k
0
votes
0
replies
615
views
Answer:
Answer: Low similarity gene alignment
2.8 years ago by
Carlo Yague
8.7k
4
votes
1
reply
2.8k
views
Answer:
Answer: Visualiation of samtools depth output in a plot
2.8 years ago by
Carlo Yague
8.7k
4
votes
1
reply
944
views
Answer:
Answer: FeatureCounts dont read all features
2.8 years ago by
Carlo Yague
8.7k
0
votes
1
reply
862
views
Answer:
Answer: How can I drop the MAPQ info of my sam/bam file?
2.9 years ago by
Carlo Yague
8.7k
1
vote
0
replies
1.8k
views
Answer:
Answer: deeptools 3.5 plotCorrelation
2.9 years ago by
Carlo Yague
8.7k
0
votes
0
replies
542
views
Answer:
Answer: RNA-seq: extraction and annotation of differentially expressed genes
2.9 years ago by
Carlo Yague
8.7k
4
votes
1
reply
3.7k
views
Answer:
Answer: Help with rownames in DESeq2
2.9 years ago by
Carlo Yague
8.7k
2
votes
1
reply
3.6k
views
Answer:
Answer: How to distinguish orthologs from paralogs?
2.9 years ago by
Carlo Yague
8.7k
1
vote
1
reply
1.8k
views
Answer:
Answer: Only one gene is upregulated?
2.9 years ago by
Carlo Yague
8.7k
2
votes
0
replies
608
views
Answer:
Answer: From which genome assembly do these coordinates come?
2.9 years ago by
Carlo Yague
8.7k
0
votes
0
replies
1.1k
views
Answer:
Answer: How to Align multiple short reads (NGS data) to a short (~200bp) reference?
2.9 years ago by
Carlo Yague
8.7k
6
votes
0
replies
3.1k
views
Answer:
Answer: How to Write Loop For Trimming Every FastQ File Individually
2.9 years ago by
Carlo Yague
8.7k
0
votes
1
reply
2.4k
views
Answer:
Answer: different sequencing depths for Input and IP in ChIP-Seq
3.0 years ago by
Carlo Yague
8.7k
5
votes
3
replies
3.7k
views
Answer:
Answer: DESeq2 design for two variables and pairwise comparisons
3.0 years ago by
Carlo Yague
8.7k
3
votes
0
replies
648
views
Answer:
Answer: Is it bad practice to change threshold for interaction probability?
3.0 years ago by
Carlo Yague
8.7k
0
votes
1
reply
2.0k
views
Answer:
Answer: Quantification of stranded RNA-seq data
3.1 years ago by
Carlo Yague
8.7k
1
vote
0
replies
509
views
Answer:
A: Batch-correction of partially confounded RNA-seq data
3.2 years ago by
Carlo Yague
8.7k
1
vote
1
reply
7.3k
views
Answer:
A: scatter plot, aov()
3.2 years ago by
Carlo Yague
8.7k
0
votes
2
replies
6.3k
views
Answer:
C: Samtools command not found
3.2 years ago by
Carlo Yague
8.7k
1
vote
1
reply
909
views
Answer:
A: DESeq multiple factor question
3.2 years ago by
Carlo Yague
8.7k
2
votes
0
replies
997
views
Answer:
A: Is it necessary to test for multiple correction during differential expression a
3.2 years ago by
Carlo Yague
8.7k
3
votes
1
reply
1.0k
views
Answer:
A: Merging chip-seq samples sequenced in two different runs
3.2 years ago by
Carlo Yague
8.7k
1
vote
0
replies
2.6k
views
Answer:
A: featureCounts paired end mode
3.2 years ago by
Carlo Yague
8.7k
0
votes
0
replies
609
views
Answer:
A: Regarding tophat output
3.2 years ago by
Carlo Yague
8.7k
4
votes
1
reply
1.2k
views
Answer:
A: Read counts generated from featureCounts
3.2 years ago by
Carlo Yague
8.7k
2
votes
1
reply
3.8k
views
Answer:
A: bowtie2 --un vs --un-conc
3.2 years ago by
Carlo Yague
8.7k
324 results • Page
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