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1.0k
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Answer: C: Adapters remains after cutting them out
3.3 years ago by Carlo Yague 8.7k
1
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3
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2.4k
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Answer: A: Outputting Unassigned reads from Rsubread featureCounts
3.3 years ago by Carlo Yague 8.7k
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937
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Answer: A: RNAseq data for Deseq2 from different library
3.3 years ago by Carlo Yague 8.7k
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1
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1.8k
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Answer: A: Using Deseq2 for RNA-seq analysis of 4 different groups of cells
3.3 years ago by Carlo Yague 8.7k
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0
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670
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Answer: A: How correlate between transcriptome data and expression, without proteome data?
3.3 years ago by Carlo Yague 8.7k
2
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1
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2.2k
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Answer: C: champ.norm task 1 failed - "could not find function "blc""
3.4 years ago by Carlo Yague 8.7k
2
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1
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859
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Answer: A: Mergine same one column different files
3.4 years ago by Carlo Yague 8.7k
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13k
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Answer: A: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
3.4 years ago by Carlo Yague 8.7k
4
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1
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953
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Answer: A: Why removing sample from one group in DESeqDataSet changes DGE of other two grou
3.4 years ago by Carlo Yague 8.7k
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4.4k
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Answer: A: Best open source genome browser in 2020
3.4 years ago by Carlo Yague 8.7k
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0
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670
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Answer: A: featureCounts: strandedness problem/inconsistency
3.4 years ago by Carlo Yague 8.7k
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948
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Answer: A: How is it possible to recognize replicates?
3.5 years ago by Carlo Yague 8.7k
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1.2k
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Answer: A: What could be the cause of different levels of binding in ChIP-Seq Input samples
3.5 years ago by Carlo Yague 8.7k
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2.0k
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Answer: C: Should I do P-value adjustment in this case?
3.5 years ago by Carlo Yague 8.7k
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0
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2.5k
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Answer: A: Can we run FastQC and BWA on .fastq.bz2 files
3.5 years ago by Carlo Yague 8.7k
3
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1
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3.2k
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Answer: A: Correlation in RNAseq
3.5 years ago by Carlo Yague 8.7k
2
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1
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1.8k
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Answer: A: Reliability of gene expression with low exonic counts in bulk RNA-seq data
3.7 years ago by Carlo Yague 8.7k
0
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1
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1.1k
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Answer: A: long-non coding RNA and protein-coding genes correlation
4.0 years ago by Carlo Yague 8.7k
1
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1
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1.6k
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Answer: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.2 years ago by Carlo Yague 8.7k
1
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2
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1.8k
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Answer: A: Bedtools intersect/bcftools annotate dublicate the SNPs
4.2 years ago by Carlo Yague 8.7k
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0
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1.7k
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Answer: A: Removing outliers from bigwig files
4.2 years ago by Carlo Yague 8.7k
1
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0
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3.8k
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Answer: A: Difference in number of reads in tophat and htseq-count outputs
updated 4.4 years ago by 43k • written 8.4 years ago by 8.7k
1
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0
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2.5k
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Answer: A: How to check if a gene is comprised in a certain interval? with R
updated 4.5 years ago by 43k • written 8.5 years ago by 8.7k
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0
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1.6k
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Answer: A: Splicing affected DE genes
updated 4.5 years ago by 43k • written 8.5 years ago by 8.7k
1
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1
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950
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Answer: A: Input for DESEQ2 (after featurecounts)
4.5 years ago by Carlo Yague 8.7k
3
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1
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2.5k
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Answer: A: trimming or masking ?
updated 4.5 years ago by 43k • written 8.6 years ago by 8.7k
3
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1
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1.2k
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Answer: A: What should be the frequency of a Single Nucleotide variation to be called as pa
updated 4.5 years ago by 43k • written 8.6 years ago by 8.7k
1
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1
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1.4k
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Answer: A: SRA sequence, FastQC, RNA seeq
updated 4.5 years ago by 43k • written 8.6 years ago by 8.7k
2
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1
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1.0k
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Answer: A: Finding the best alignment from a paternal and maternal BAM file
4.5 years ago by Carlo Yague 8.7k
3
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0
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2.1k
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Answer: A: Using ColSums vs sizeFactors in read count normalization
4.5 years ago by Carlo Yague 8.7k
1
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2
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1.2k
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Answer: A: How to get multi mappers from bowtie 1
4.5 years ago by Carlo Yague 8.7k
0
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0
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2.5k
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Answer: A: Getting uniquely aligned properly paired reads
4.5 years ago by Carlo Yague 8.7k
3
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2
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1.1k
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Answer: A: Couting number of similar reads in sam file and output in bed file?
4.5 years ago by Carlo Yague 8.7k
1
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0
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1.5k
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Answer: A: Advice on DE analysis of mouse and human merged RNA-seq data
4.5 years ago by Carlo Yague 8.7k
1
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1
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4.2k
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Answer: A: HIsat2 bam and summary output - multiple output file type
4.8 years ago by Carlo Yague 8.7k
2
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1
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4.8k
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Answer: A: Very low percentage of assigned reads using featureCounts
4.9 years ago by Carlo Yague 8.7k
1
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1
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8.6k
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Answer: A: DESeq2 converting numeric to factor for unknown reason
4.9 years ago by Carlo Yague 8.7k
6
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2
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2.2k
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Answer: A: Differential gene expression analysis by DESeq2
4.9 years ago by Carlo Yague 8.7k
3
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0
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4.2k
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Answer: A: Batch effect, how to create a model matrix
5.0 years ago by Carlo Yague 8.7k
1
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2
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3.1k
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Answer: C: Subsampling one bamfile multiple times?
5.1 years ago by Carlo Yague 8.7k
1
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1
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2.1k
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Answer: A: DESeq2 model design
5.1 years ago by Carlo Yague 8.7k
2
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1
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6.6k
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Answer: A: Antisense transcription from strand specific RNA-seq
5.5 years ago by Carlo Yague 8.7k
1
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0
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5.4k
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Answer: A: Extract sequences from a FASTA file using a gtf file
5.5 years ago by Carlo Yague 8.7k
1
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0
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1.4k
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Answer: A: Seeking ideas and guidance for an undergraduate project
5.6 years ago by Carlo Yague 8.7k
3
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1
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11k
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Answer: A: Calculating percentage of reads mapped to a reference genome
5.7 years ago by Carlo Yague 8.7k
4
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1
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2.2k
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Answer: A: RNA-seq analysis of virally infected cells
5.7 years ago by Carlo Yague 8.7k
7
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0
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8.2k
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Answer: A: The bed12 format
5.8 years ago by Carlo Yague 8.7k
1
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1
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2.4k
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Answer: A: Is there a code to find consensus motif
5.8 years ago by Carlo Yague 8.7k
1
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0
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5.2k
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Answer: A: Compute average score across multiple bed files
5.8 years ago by Carlo Yague 8.7k
2
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1
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2.4k
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Answer: C: Conversion of Fasta file
5.8 years ago by Carlo Yague 8.7k
324 results • Page 3 of 7
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