Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
1
vote
1
reply
957
views
Answer:
A: Extract SV indicating pair-end reads
4.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.2k
views
Answer:
A: fusion detection for DNA Sequencing data
4.1 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
6.1k
views
Answer:
A: bwa mem memory allocation, threads and nodes
4.3 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
1.5k
views
Answer:
A: Approach to structural variation analysis - case vs control
4.6 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.3k
views
Answer:
A: value of TLEN not conforming to the SAM specifications
4.7 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.7k
views
Answer:
A: Number of Tandem and Interspersed duplications
4.7 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
5.4k
views
Answer:
A: BWA MEM Definition of a Primary Alignment
4.9 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
2.1k
views
Answer:
A: how to output the best alignment rather than multiple alignments for each read i
5.0 years ago by
d-cameron
★ 2.9k
2
votes
2
replies
2.6k
views
Answer:
A: identifying transgene insertion site in WGS
5.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.9k
views
Answer:
A: Why call variant generate homozygous site with genotype 0/0, why it be reporte
5.1 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
2.5k
views
Answer:
A: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
5.3 years ago by
d-cameron
★ 2.9k
2
votes
2
replies
2.5k
views
Answer:
A: Create a File format to store Variant
5.9 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
3.2k
views
Answer:
A: bowtie2 paired end insertion length
5.9 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.4k
views
Answer:
A: assembling a sequence from the pairs of letters (X,Y)
5.9 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
3.3k
views
Answer:
A: Difference between marking duplicates and filtering BAM on phred score
5.9 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
3.1k
views
Answer:
A: Generate the sequence dictionary
5.9 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.6k
views
Answer:
A: Aligning to ultra-short reference sequence
6.0 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.0k
views
Answer:
A: VCF Format - how to create the underlying seqeuence
6.0 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.8k
views
Answer:
A: Copy number variation detection
6.0 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.4k
views
Answer:
A: Fastq file size after splitting bam
6.0 years ago by
d-cameron
★ 2.9k
3
votes
0
replies
987
views
Answer:
A: reduce size of string
6.0 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
7.6k
views
Answer:
A: compare SV results across samples - Manta, Delly
6.0 years ago by
d-cameron
★ 2.9k
2
votes
1
reply
1.7k
views
Answer:
A: Determine Insertion Sequence
6.1 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.2k
views
Answer:
A: Best DOI provider for a custom genome index ?
6.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
960
views
Answer:
A: How to identify potential target protein of any novel small compound
6.1 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.5k
views
Answer:
A: Theory v Reality
6.1 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
4.1k
views
Answer:
A: Counting soft clipped bases and reads
updated 6.1 years ago by
h.mon
35k • written 6.1 years ago by
d-cameron
★ 2.9k
5
votes
0
replies
18k
views
Answer:
A: What's Supplementary Reads?
6.1 years ago by
d-cameron
★ 2.9k
3
votes
1
reply
3.9k
views
Answer:
A: How can I split the soft clipped reads and map the splitted reads again.
6.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
2.5k
views
Answer:
A: Detecting Overlaps within Grange Object
6.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.8k
views
Answer:
A: bwa mem without -M option how to continue using picard
6.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.9k
views
Answer:
A: Does samtools view -b -h <input.bam> -L <input.bed> keep the original header?
6.1 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
2.2k
views
Answer:
A: Are there any human genome variant callers and BAM indexing and sorting tools to
6.1 years ago by
d-cameron
★ 2.9k
4
votes
1
reply
2.3k
views
Answer:
A: Gold standard datasets
6.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.1k
views
Answer:
A: SNP annotation from RNA-seq data without referene
6.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.7k
views
Answer:
A: Count intron retention reads from BAM files
6.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.5k
views
Answer:
A: What's the difference between 'clipping' and 'unmapped' and 'skipped'?
6.1 years ago by
d-cameron
★ 2.9k
4
votes
0
replies
1.2k
views
Answer:
A: How can overlap with paired end sequence??
6.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
2.7k
views
Answer:
A: How to create dummy VCF with fusion variants
6.1 years ago by
d-cameron
★ 2.9k
4
votes
0
replies
3.5k
views
Answer:
A: Number of threads in BWA
6.2 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.9k
views
Answer:
A: Identifying inserts (tranposable elements) using PE sequencing
6.2 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.3k
views
Answer:
A: Do structural variations on pseudo-gene mean any thing?
6.2 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.7k
views
Answer:
A: How to check if a read in a SAM file contains substitutions
6.2 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.6k
views
Answer:
A: What's the difference between half mapped reads and single paired reads?
6.2 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
2.4k
views
Answer:
A: Can Breakdancer be applied on Paired end Exome Sequencing data for germline copy
6.2 years ago by
d-cameron
★ 2.9k
4
votes
0
replies
3.5k
views
Answer:
A: How to combine multiple tools to detct SVs in WES data
6.2 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
2.5k
views
Answer:
A: Why does read with "read paired" flag not have mate in bam file?
6.2 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.7k
views
Answer:
A: Basics about sequencing/alignment and variant calling
6.2 years ago by
d-cameron
★ 2.9k
0
votes
1
reply
2.2k
views
Answer:
A: What cigar to use to count reads with last base mismatch in Rsamtools?
6.2 years ago by
d-cameron
★ 2.9k
1
vote
2
replies
12k
views
Answer:
A: annotation of SV (structural variants)
6.3 years ago by
d-cameron
★ 2.9k
152 results • Page
2 of 4
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6