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Showing :
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1.8k
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Answer:
A: Apt way to perform multi pairwise alignments ?
updated 5.1 years ago by
Ram
44k • written 9.0 years ago by
Benn
8.4k
0
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0
replies
2.1k
views
Answer:
A: Calculating Pairwise Alignment Scores
5.3 years ago by
Benn
8.4k
2
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1
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1.1k
views
Answer:
A: Deferentially Expressed Genes using Genes count data obtained from RNASeq
5.3 years ago by
Benn
8.4k
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2
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Answer:
A: Single-color and two color Agilent array analyzing in R
5.4 years ago by
Benn
8.4k
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1
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1.5k
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Answer:
A: How to do a GO enrichment analysis for large amount of data using R
5.4 years ago by
Benn
8.4k
1
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0
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11k
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Answer:
C: Row labelling heatmap in R
5.4 years ago by
Benn
8.4k
1
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1
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4.8k
views
Answer:
C: Atypical Volcano plot of RNAseq data
5.4 years ago by
Benn
8.4k
1
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1
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6.7k
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Answer:
A: GO enrichment analysis graphs after goseq: any easy solutions?
5.4 years ago by
Benn
8.4k
4
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1.4k
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Answer:
A: Analyzing normalized microarray data
5.4 years ago by
Benn
8.4k
2
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1
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3.9k
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Answer:
A: How to define a column containing gene names "text" (instead of "general") when
5.4 years ago by
Benn
8.4k
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1.9k
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Answer:
A: Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly
5.4 years ago by
Benn
8.4k
5
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Answer:
A: grep DNA after a pattern
5.5 years ago by
Benn
8.4k
1
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0
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847
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Answer:
C: Drug resistance gene expression of cancer
5.5 years ago by
Benn
8.4k
1
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1
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1.6k
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Answer:
C: Is Batch correction required for the same micro array platform?
5.5 years ago by
Benn
8.4k
3
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1.1k
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Answer:
A: Find the most frequently appeared genes in a list of pathways and genes
5.5 years ago by
Benn
8.4k
1
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1
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1.5k
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Answer:
A: Genotype analysis of microarray data
5.5 years ago by
Benn
8.4k
1
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1
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739
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Answer:
A: publication of RPKMs of select genes from transcriptome study
5.5 years ago by
Benn
8.4k
2
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1
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1.5k
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Answer:
C: Why won't this list of strings store as a variable in R?
5.6 years ago by
Benn
8.4k
2
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4.2k
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Answer:
A: cut the sequence from fasta file
5.6 years ago by
Benn
8.4k
4
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1
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1.3k
views
Answer:
A: extraction significant genes
5.6 years ago by
Benn
8.4k
1
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7.2k
views
Answer:
C: How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
5.6 years ago by
Benn
8.4k
3
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7.7k
views
Answer:
C: Homer error, how to call homer properly in a script? and how to know that it's a
5.6 years ago by
Benn
8.4k
2
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1
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1.3k
views
Answer:
C: unequal fastq files
5.7 years ago by
Benn
8.4k
4
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1
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1.4k
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Answer:
C: Generating count table
5.8 years ago by
Benn
8.4k
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0
replies
1.3k
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Answer:
A: GTF file in Ensembl database for RNA-Seq analysis
5.8 years ago by
Benn
8.4k
1
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2
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5.1k
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Answer:
A: Visualisation of GO Terms
5.8 years ago by
Benn
8.4k
4
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1
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17k
views
Answer:
A: removing gene names from my matrix
updated 5.8 years ago by
Ram
44k • written 9.1 years ago by
Benn
8.4k
1
vote
1
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4.6k
views
Answer:
C: Differential analysis show different results with edgeR and in box plot with t-t
5.8 years ago by
Benn
8.4k
1
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1
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1.9k
views
Answer:
A: What human transcriptome annotation to use for RNA-seq analysis
5.8 years ago by
Benn
8.4k
2
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0
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2.9k
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Answer:
C: How to add biological annotations using R
5.9 years ago by
Benn
8.4k
1
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0
replies
987
views
Answer:
C: databases for any specific gene
6.0 years ago by
Benn
8.4k
2
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0
replies
4.3k
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Answer:
A: How to analyse TXT format microarray data
6.0 years ago by
Benn
8.4k
1
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0
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1.5k
views
Answer:
A: Protein protein interaction figure
6.0 years ago by
Benn
8.4k
2
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0
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5.0k
views
Answer:
A: Change NBCI accession numbers to UNIPROT identifiers
6.0 years ago by
Benn
8.4k
1
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1
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5.1k
views
Answer:
A: How to get number of exons for each transcript in biomart
6.0 years ago by
Benn
8.4k
2
votes
1
reply
1.4k
views
Answer:
C: can we replace #N/a with 0 for using edgeR
6.0 years ago by
Benn
8.4k
1
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1
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3.4k
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Answer:
C: pathway analysis: ReactomePA and clusterProfiler
6.0 years ago by
Benn
8.4k
0
votes
2
replies
8.2k
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Answer:
A: Remove duplicates in an extremely large text file
6.0 years ago by
Benn
8.4k
1
vote
0
replies
4.2k
views
Answer:
A: Limma can make differential expression with just one case in one group?
6.0 years ago by
Benn
8.4k
2
votes
1
reply
4.6k
views
Answer:
C: ANOVA or Linear regression for RNAseq data analysis with 3 factors
6.0 years ago by
Benn
8.4k
2
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0
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4.0k
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Answer:
A: is there any statistical way to analysis two groups without replications?
6.1 years ago by
Benn
8.4k
1
vote
1
reply
3.0k
views
Answer:
C: LIMMA analysis with 2 samples in comparison group
6.1 years ago by
Benn
8.4k
3
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1
reply
1.9k
views
Answer:
C: Values in the data.frame are negative by RMA normalization, how deseq2 package w
6.1 years ago by
Benn
8.4k
2
votes
0
replies
4.5k
views
Answer:
A: How big is the human exome?
6.1 years ago by
Benn
8.4k
3
votes
0
replies
6.3k
views
Answer:
A: edgeR batch effect
6.1 years ago by
Benn
8.4k
1
vote
2
replies
2.2k
views
Answer:
A: Where to find a list of stress response genes?
6.2 years ago by
Benn
8.4k
1
vote
1
reply
5.4k
views
Answer:
A: how to plot PCA for microarray normalized data
6.2 years ago by
Benn
8.4k
1
vote
1
reply
3.2k
views
Answer:
A: EdgeR with Paired Sample Replicates
6.2 years ago by
Benn
8.4k
2
votes
1
reply
2.5k
views
Answer:
C: Differential analysis with replicates using edgeR
6.2 years ago by
Benn
8.4k
2
votes
1
reply
1.9k
views
Answer:
A: Majority of genes upregulated in RNA-seq study of toxic compound
6.2 years ago by
Benn
8.4k
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