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Comment: C: Bioinformatics project for a beginner
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
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1
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3.5k
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Comment: C: How to identify a certain pattern for histone marks
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
0
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1
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23k
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Comment: C: Error when trying to use samtools to convert a sam files to a bam file
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
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0
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23k
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Comment: C: Error when trying to use samtools to convert a sam files to a bam file
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
0
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3
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23k
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Comment: C: Error when trying to use samtools to convert a sam files to a bam file
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
0
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1
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23k
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Comment: C: Error when trying to use samtools to convert a sam files to a bam file
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
0
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0
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6.0k
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Comment: C: pllotting tag density across TSS and TES
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
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0
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3.3k
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Comment: C: Align FastQ file to reference mouse mm9 genome
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 60
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1
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2.4k
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Comment: C: How to test for enrichment of three bed files that 'may' form a complex
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 60
16
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21
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13k
views
7 follow
How to extract bigWig signal for a given bed file?
bigWig
updated 2.2 years ago by 45k • written 9.1 years ago by ▴ 60
1
vote
1
reply
1.9k
views
Log Ratios of normalized tag count, greater or lower than 0
log-ratios normalized-tag-counts ChIP-Seq
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 60
5
votes
1
reply
3.2k
views
Testing for over-representation of chip-peaks
Overrepresentation ChIP-Seq R Stats
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 60
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0
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2.3k
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Comment: C: Using BBMap for ChIP-seq data
8.8 years ago by Bioradical ▴ 60
0
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1
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2.3k
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Comment: C: Using BBMap for ChIP-seq data
8.8 years ago by Bioradical ▴ 60
1
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5
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2.3k
views
Using BBMap for ChIP-seq data
bbmap ChIP-Seq
8.8 years ago by Bioradical ▴ 60
0
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0
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5.6k
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Answer: A: call differential peaks H3K27ac
9.0 years ago by Bioradical ▴ 60
0
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1
reply
13k
views
Comment: C: How to extract bigWig signal for a given bed file?
9.1 years ago by Bioradical ▴ 60
5
votes
3
replies
3.0k
views
Filtering out broad peaks
filter ChIP-Seq
updated 9.9 years ago by ▴ 250 • written 10.0 years ago by ▴ 60
0
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1
reply
23k
views
Comment: C: Error when trying to use samtools to convert a sam files to a bam file
9.9 years ago by Bioradical ▴ 60
3
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13
replies
23k
views
Error when trying to use samtools to convert a sam files to a bam file
samtools
updated 3.9 years ago by 45k • written 9.9 years ago by ▴ 60
0
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0
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23k
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Comment: C: Error when trying to use samtools to convert a sam files to a bam file
9.9 years ago by Bioradical ▴ 60
0
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0
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1.7k
views
Comment: C: P300 Dataset in HCT116
9.9 years ago by Bioradical ▴ 60
0
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2
replies
1.7k
views
P300 Dataset in HCT116
ChIP-Seq encode P300
9.9 years ago by Bioradical ▴ 60
0
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0
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3.4k
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Comment: C: Re-creating a published figure
9.9 years ago by Bioradical ▴ 60
5
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6
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3.4k
views
Re-creating a published figure
ChIP-Seq Metagene
updated 3.2 years ago by 45k • written 9.9 years ago by ▴ 60
0
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0
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4.8k
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Comment: Comment: Exon Center signal maps (metagene plots) using deepTools
updated 3.2 years ago by 45k • written 9.9 years ago by ▴ 60
0
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0
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3.4k
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Comment: C: Re-creating a published figure
9.9 years ago by Bioradical ▴ 60
0
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2
replies
4.8k
views
Comment: C: Exon Center signal maps (metagene plots) using deepTools
9.9 years ago by Bioradical ▴ 60
0
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1
reply
6.0k
views
Answer: A: pllotting tag density across TSS and TES
9.9 years ago by Bioradical ▴ 60
0
votes
1
reply
4.8k
views
Comment: C: Exon Center signal maps (metagene plots) using deepTools
9.9 years ago by Bioradical ▴ 60
0
votes
1
reply
4.8k
views
Comment: C: Exon Center signal maps (metagene plots) using deepTools
9.9 years ago by Bioradical ▴ 60
6
votes
9
replies
4.8k
views
Exon Center signal maps (metagene plots) using deepTools
ChIP-Seq metagene deepTools
updated 3.2 years ago by 45k • written 9.9 years ago by ▴ 60
0
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1
reply
3.4k
views
Comment: C: Re-creating a published figure
9.9 years ago by Bioradical ▴ 60
0
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1
reply
4.4k
views
Comment: C: I am having trouble understanding how to begin this ChIP-Seq analysis.
9.9 years ago by Bioradical ▴ 60
0
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1
reply
2.4k
views
Answer: A: skills for DNA sequencing and genomics
10.0 years ago by Bioradical ▴ 60
0
votes
0
replies
4.3k
views
RefSeq Genes on IGV
IGV ChIP-Seq Gencode RefSeq
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 60
0
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0
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2.4k
views
Comment: C: How to test for enrichment of three bed files that 'may' form a complex
10.0 years ago by Bioradical ▴ 60
1
vote
3
replies
2.4k
views
How to test for enrichment of three bed files that 'may' form a complex
enrichment-test ChIP-Seq phyper
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 60
8
votes
6
replies
7.5k
views
How to find overlapping regions among three bed files [Solved]
bedtools overlaps
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 60
0
votes
0
replies
7.5k
views
Comment: C: How to find overlapping regions among three bed files
10.0 years ago by Bioradical ▴ 60
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