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Answer: Answer: How to compare compare two Sam files to check mapping
5 months ago by DavidStreid ▴ 90
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Best Practices for CRAM <-> BAM
sambamba bam cram samtools
updated 17 months ago by 146k • written 17 months ago by ▴ 90
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Comment: Comment: Concatenating 4 files into 1
20 months ago by DavidStreid ▴ 90
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1.5k
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Comment: Comment: Concatenating 4 files into 1
20 months ago by DavidStreid ▴ 90
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1.5k
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Answer: Answer: Concatenating 4 files into 1
20 months ago by DavidStreid ▴ 90
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1.3k
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Comment: Comment: HaplotypeCaller: GVCF-Mode or VCF for variant calling of single sample?
21 months ago by DavidStreid ▴ 90
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3
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1.3k
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HaplotypeCaller: GVCF-Mode or VCF for variant calling of single sample?
haplotypecaller vcf gatk gvcf
21 months ago by DavidStreid ▴ 90
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12k
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Comment: Comment: Laptops for bioinformatics
23 months ago by DavidStreid ▴ 90
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Comment: Comment: Right Align Variants
23 months ago by DavidStreid ▴ 90
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35k
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Comment: Comment: Sort VCF File by Position?
2.1 years ago by DavidStreid ▴ 90
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2
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35k
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Comment: Comment: Sort VCF File by Position?
2.1 years ago by DavidStreid ▴ 90
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822
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Comment: Comment: Easiest way to run BLAST, specifically blastn, against multiple databases
2.4 years ago by DavidStreid ▴ 90
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2
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822
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Easiest way to run BLAST, specifically blastn, against multiple databases
blast blastn
2.4 years ago by DavidStreid ▴ 90
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1.7k
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Comment: Comment: Cannot read non-existent file: when executing MarkDuplicates in a script
2.5 years ago by DavidStreid ▴ 90
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1
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1.7k
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Comment: Comment: Cannot read non-existent file: when executing MarkDuplicates in a script
2.5 years ago by DavidStreid ▴ 90
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1.7k
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Comment: Comment: Handling large genome size in BLAST+
2.6 years ago by DavidStreid ▴ 90
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1
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1.7k
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Comment: Comment: Handling large genome size in BLAST+
2.6 years ago by DavidStreid ▴ 90
1
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1
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1.7k
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Comment: Comment: Handling large genome size in BLAST+
2.6 years ago by DavidStreid ▴ 90
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1
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1.7k
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Comment: Comment: Handling large genome size in BLAST+
2.6 years ago by DavidStreid ▴ 90
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Comment: Comment: Help interpreting BLAST results? (Max score/Percent. Identity/E-values)
2.6 years ago by DavidStreid ▴ 90
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19k
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Comment: Comment: Regarding Split reads and discordant reads
2.9 years ago by DavidStreid ▴ 90
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677
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Converting Genome Reference Consortium to UCSC, i.e. GRCh* -> hg*
GRCh37 GRCh38 Liftover hg38 hg19
2.9 years ago by DavidStreid ▴ 90
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Answer: Answer: Can Base Pair Positions Change Between Patches Of Builds? (Say Between Grch37.P5
2.9 years ago by DavidStreid ▴ 90
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2.1k
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Comment: Comment: Troubleshooting Tips - bcl2fastq creates duplicate reads
3.1 years ago by DavidStreid ▴ 90
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1
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2.1k
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Comment: Comment: Troubleshooting Tips - bcl2fastq creates duplicate reads
3.1 years ago by DavidStreid ▴ 90
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1
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2.1k
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Comment: Comment: Troubleshooting Tips - bcl2fastq creates duplicate reads
3.1 years ago by DavidStreid ▴ 90
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1
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2.1k
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Comment: Comment: Troubleshooting Tips - bcl2fastq creates duplicate reads
3.1 years ago by DavidStreid ▴ 90
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8
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2.1k
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Forum: Troubleshooting Tips - bcl2fastq creates duplicate reads
bcl2fastq duplicates readgroup demultiplex
3.1 years ago by DavidStreid ▴ 90
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2.1k
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Comment: Comment: Liftover vcf file from hs37d5 assembly to b37 assembly
3.1 years ago by DavidStreid ▴ 90
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0
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16k
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Comment: Comment: What is the difference between GRCh37 and hs37? And hg19?
3.1 years ago by DavidStreid ▴ 90
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3.2k
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Comment: C: BCL2FASTQ Dual-Index Barcode Collisions - Is the i5 Index not considered when de
3.6 years ago by DavidStreid ▴ 90
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3.2k
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BCL2FASTQ Dual-Index Barcode Collisions - Is the i5 Index not considered when determining the number of mismatches?
bcl2fastq barcode collision barcode-mismatches
updated 3.6 years ago by 146k • written 3.6 years ago by ▴ 90
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2.7k
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Answer: A: GATK CalculateContamination - zeros in output
3.9 years ago by DavidStreid ▴ 90
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11k
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Answer: A: What Is Best Current Dna Compression Algorithm?
5.2 years ago by DavidStreid ▴ 90
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2
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2.0k
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Google Cloud - VCF Creation Support from .bam
Bam vcf google cloud google genomic
7.3 years ago by DavidStreid ▴ 90
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4
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1.7k
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Solutions for genomic dataset storage?
genome sequence storage cloud
updated 7.4 years ago by 13k • written 7.4 years ago by ▴ 90
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