Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
8.6k
views
Answer: A: CNVkit for germline samples
7.0 years ago by Eric T. ★ 2.9k
1
vote
1
reply
2.1k
views
Answer: A: BioPython, PhyloXML and duplication nodes
updated 7.0 years ago by 45k • written 9.6 years ago by ★ 2.9k
1
vote
0
replies
1.7k
views
Answer: A: Copy number variant from SNP array
updated 7.0 years ago by 45k • written 9.6 years ago by ★ 2.9k
8
votes
2
replies
14k
views
Answer: A: Help with understanding CNVkit output
updated 7.0 years ago by 45k • written 9.6 years ago by ★ 2.9k
2
votes
1
reply
9.5k
views
Answer: A: Reproducible Research: A More General Sweave?
updated 7.0 years ago by 45k • written 10.8 years ago by ★ 2.9k
0
votes
0
replies
1.5k
views
Answer: A: Running cnvkit batch with -y parameter
7.0 years ago by Eric T. ★ 2.9k
1
vote
0
replies
1.5k
views
Answer: A: Best variant caller for CNVkit
7.1 years ago by Eric T. ★ 2.9k
0
votes
0
replies
2.2k
views
Comment: C: CNVkit: gene results not in output
7.2 years ago by Eric T. ★ 2.9k
1
vote
1
reply
2.2k
views
Answer: A: CNVkit: gene results not in output
7.2 years ago by Eric T. ★ 2.9k
0
votes
2
replies
3.5k
views
Answer: A: minus integer copy number when using --purity for cnvkit
7.2 years ago by Eric T. ★ 2.9k
2
votes
0
replies
1.9k
views
Answer: A: Using CNVkit to identify poor-quality normal samples
7.3 years ago by Eric T. ★ 2.9k
0
votes
0
replies
2.2k
views
Answer: A: Is there a way to plot both tumor and normal samples' copy number segments on t
7.4 years ago by Eric T. ★ 2.9k
0
votes
0
replies
1.8k
views
Comment: C: CNV details about the normal samples?
7.4 years ago by Eric T. ★ 2.9k
1
vote
1
reply
2.1k
views
Answer: A: a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
7.5 years ago by Eric T. ★ 2.9k
2
votes
1
reply
5.0k
views
Answer: A: CNV detection using BAM file
7.5 years ago by Eric T. ★ 2.9k
1
vote
0
replies
2.0k
views
Answer: A: Detect exon deletion/duplication from NGS amplicon
7.5 years ago by Eric T. ★ 2.9k
2
votes
0
replies
2.2k
views
Answer: A: How to use DNAcopy package to analyze Affymetrix SNP array?
7.5 years ago by Eric T. ★ 2.9k
0
votes
0
replies
1.8k
views
Answer: A: CNVkit segmetrics error
7.5 years ago by Eric T. ★ 2.9k
1
vote
0
replies
3.0k
views
Answer: A: WGS coverage (depth) for CNV detection
7.5 years ago by Eric T. ★ 2.9k
0
votes
0
replies
6.1k
views
Comment: C: CNVkit : small CNV calling
7.5 years ago by Eric T. ★ 2.9k
0
votes
0
replies
4.6k
views
Comment: C: Using THETA2 from CNVkit: what king of vcf do you need?
7.6 years ago by Eric T. ★ 2.9k
2
votes
0
replies
3.0k
views
Answer: A: Regarding Cnvkit analysis
7.6 years ago by Eric T. ★ 2.9k
1
vote
1
reply
4.9k
views
Comment: C: CNVkit - how many normal samples do I need for the pooled normal reference?
7.6 years ago by Eric T. ★ 2.9k
0
votes
1
reply
4.1k
views
Comment: C: tumor/normal WGS with CNVkit has many small segments with small copy number chan
7.6 years ago by Eric T. ★ 2.9k
2
votes
1
reply
4.9k
views
Answer: A: CNVkit - how many normal samples do I need for the pooled normal reference?
7.6 years ago by Eric T. ★ 2.9k
0
votes
0
replies
1.6k
views
Answer: A: CNVKit - Gene labels in 'diagram'
7.6 years ago by Eric T. ★ 2.9k
1
vote
1
reply
6.6k
views
Answer: A: visualize CNV data based on WGS
7.6 years ago by Eric T. ★ 2.9k
1
vote
1
reply
4.1k
views
Answer: A: tumor/normal WGS with CNVkit has many small segments with small copy number chan
7.6 years ago by Eric T. ★ 2.9k
2
votes
1
reply
5.2k
views
Answer: A: CNVKIT import errors
7.6 years ago by Eric T. ★ 2.9k
1
vote
0
replies
1.7k
views
Answer: A: Any techniques faster than Breakdancer?
7.7 years ago by Eric T. ★ 2.9k
2
votes
1
reply
8.0k
views
Comment: C: Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant
7.8 years ago by Eric T. ★ 2.9k
1
vote
1
reply
4.1k
views
Answer: A: How to merge CNV of multiple samples from CNVkit
7.8 years ago by Eric T. ★ 2.9k
0
votes
0
replies
2.0k
views
Comment: C: cnvkit segmetrics on multiple files
7.8 years ago by Eric T. ★ 2.9k
0
votes
0
replies
8.8k
views
Comment: C: What does it mean to say "b-allele frequency"?
7.8 years ago by Eric T. ★ 2.9k
2
votes
1
reply
3.5k
views
Answer: A: WES germline CNV caller for trio analysis
7.8 years ago by Eric T. ★ 2.9k
0
votes
0
replies
2.0k
views
Answer: A: cnvkit segmetrics on multiple files
7.9 years ago by Eric T. ★ 2.9k
0
votes
0
replies
1.9k
views
Answer: A: Is cnvkit coverage output split into non-overlapping segments?
7.9 years ago by Eric T. ★ 2.9k
0
votes
0
replies
3.0k
views
Answer: A: Precision of loss of heterozygosity detection with Sanger sequencing vs copy num
7.9 years ago by Eric T. ★ 2.9k
0
votes
2
replies
8.6k
views
Comment: C: CNVkit for germline samples
8.0 years ago by Eric T. ★ 2.9k
1
vote
1
reply
2.1k
views
Answer: A: CNV calling on tumor sample with no germline counterpart
8.0 years ago by Eric T. ★ 2.9k
3
votes
2
replies
3.2k
views
Answer: A: Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
8.0 years ago by Eric T. ★ 2.9k
0
votes
1
reply
8.6k
views
Comment: C: CNVkit for germline samples
8.0 years ago by Eric T. ★ 2.9k
0
votes
1
reply
8.6k
views
Comment: C: CNVkit for germline samples
8.0 years ago by Eric T. ★ 2.9k
1
vote
0
replies
5.1k
views
Answer: A: I need allele copy number information for running PyClone
8.0 years ago by Eric T. ★ 2.9k
0
votes
0
replies
3.0k
views
Answer: A: cvnkit: what is the problem here?
8.0 years ago by Eric T. ★ 2.9k
0
votes
0
replies
7.7k
views
Comment: C: How to import the output of CNVkit into GISTIC2.0 ?
8.0 years ago by Eric T. ★ 2.9k
0
votes
0
replies
8.6k
views
Comment: C: CNVkit for germline samples
8.0 years ago by Eric T. ★ 2.9k
2
votes
2
replies
7.7k
views
Answer: A: How to import the output of CNVkit into GISTIC2.0 ?
8.0 years ago by Eric T. ★ 2.9k
1
vote
0
replies
5.0k
views
Answer: A: Structural Variant annotation
8.0 years ago by Eric T. ★ 2.9k
1
vote
1
reply
2.0k
views
Answer: A: Error due to annotation file while running target module from CNVkit tool
8.1 years ago by Eric T. ★ 2.9k
258 results • Page 2 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6