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732
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Answer: Answer: annotate CNVkit output
19 months ago by Eric T. ★ 2.8k
0
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689
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Answer: Answer: CNVKit on targeted amplicons with UMIs
19 months ago by Eric T. ★ 2.8k
1
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0
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595
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Answer: Answer: CNVkit background(Noise)
19 months ago by Eric T. ★ 2.8k
2
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0
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920
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Answer: Answer: The exonix length calculated from the CNVkit bed files is several fold larger th
19 months ago by Eric T. ★ 2.8k
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0
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2.6k
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Comment: C: I got a problem with making normal reference using cnvkit
3.2 years ago by Eric T. ★ 2.8k
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0
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758
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Answer: A: CNVKit sex specification in controls pool
3.2 years ago by Eric T. ★ 2.8k
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0
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936
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Comment: C: CNVkit bwa-mem parameters
3.2 years ago by Eric T. ★ 2.8k
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0
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936
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Answer: A: CNVkit bwa-mem parameters
3.3 years ago by Eric T. ★ 2.8k
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1
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4.1k
views
Answer: A: CNVKit noisy scatter plot
3.9 years ago by Eric T. ★ 2.8k
4
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4
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3.3k
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Tool: CNVkit, robust genome-wide copy number detection from DNA sequencing
SV CNV CNVkit Python
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.8k
2
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1
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2.1k
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Answer: A: Calling CNA from aCGH: Thresholding?
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.8k
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1
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4.4k
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Comment: C: CNVkit runtime for WGS?
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.8k
3
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1
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9.9k
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Answer: Answer: ABSOLUTE to estimate tumour purity from WES data
updated 16 months ago by 43k • written 8.2 years ago by ★ 2.8k
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0
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3.0k
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Answer: A: Using io.StringIO() with biopython Phylo parse
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.8k
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0
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4.3k
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Answer: A: Germline CNV caller
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.8k
4
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0
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3.5k
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Answer: A: Regarding Pseudokinases
updated 4.6 years ago by 43k • written 12.5 years ago by ★ 2.8k
1
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0
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5.0k
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Comment: C: Phylip (->Prodist) Command Line Wrapper In Biopython
updated 4.7 years ago by 43k • written 13.9 years ago by ★ 2.8k
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0
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1.1k
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Comment: C: CNVkit - diagram problem
4.7 years ago by Eric T. ★ 2.8k
0
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1
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2.4k
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Answer: A: CNVKIT - unable to produce scatter and diagram pdfs
4.7 years ago by Eric T. ★ 2.8k
2
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1
reply
1.2k
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Comment: C: Noisy CNV background in old FFPE sample
4.7 years ago by Eric T. ★ 2.8k
1
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0
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5.3k
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Answer: A: UK Biobank reference genome?
4.7 years ago by Eric T. ★ 2.8k
3
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1
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1.4k
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Answer: A: UK Biobank l2r data holds segment means but no segment locations?
4.7 years ago by Eric T. ★ 2.8k
1
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0
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1.5k
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Answer: A: CNV analysis for tumor panel
4.7 years ago by Eric T. ★ 2.8k
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0
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1.1k
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Answer: A: CNVkit - diagram problem
4.7 years ago by Eric T. ★ 2.8k
0
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0
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2.4k
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Comment: C: CNVKIT - unable to produce scatter and diagram pdfs
4.7 years ago by Eric T. ★ 2.8k
1
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2
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1.2k
views
Answer: A: Noisy CNV background in old FFPE sample
4.7 years ago by Eric T. ★ 2.8k
1
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1
reply
1.9k
views
Answer: A: Weights in cnvkit cnr output
4.7 years ago by Eric T. ★ 2.8k
2
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1
reply
2.6k
views
Answer: A: cnvkit bgzf_read error 4 after 4 bytes
4.7 years ago by Eric T. ★ 2.8k
1
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0
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1.2k
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Answer: A: No CNV calls in CNVkit import-rna
5.0 years ago by Eric T. ★ 2.8k
0
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0
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2.6k
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Comment: C: I got a problem with making normal reference using cnvkit
5.0 years ago by Eric T. ★ 2.8k
0
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0
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3.0k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.0 years ago by Eric T. ★ 2.8k
0
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1
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3.0k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.0 years ago by Eric T. ★ 2.8k
4
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0
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2.8k
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Answer: A: CNVkit for somatic copy number detection
5.0 years ago by Eric T. ★ 2.8k
0
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2
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2.6k
views
Answer: A: I got a problem with making normal reference using cnvkit
5.0 years ago by Eric T. ★ 2.8k
0
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0
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1.4k
views
Comment: C: CNVkit- weird results when using the same sample as normal
5.0 years ago by Eric T. ★ 2.8k
0
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0
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2.9k
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Comment: C: scatter plots with single chromosome gives IndexError
5.0 years ago by Eric T. ★ 2.8k
0
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0
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2.9k
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Answer: A: scatter plots with single chromosome gives IndexError
5.0 years ago by Eric T. ★ 2.8k
0
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1
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3.0k
views
Answer: A: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.1 years ago by Eric T. ★ 2.8k
1
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1
reply
1.4k
views
Answer: A: CNVkit- weird results when using the same sample as normal
5.1 years ago by Eric T. ★ 2.8k
1
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0
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2.7k
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Comment: C: CNVkit: Dealing with noisy tumor samples
5.1 years ago by Eric T. ★ 2.8k
1
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0
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1.3k
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Answer: A: Filtering number of markers after segmentation using DNAcopy
5.2 years ago by Eric T. ★ 2.8k
0
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1
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2.7k
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Answer: A: CNVkit: Dealing with noisy tumor samples
5.2 years ago by Eric T. ★ 2.8k
0
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0
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1.7k
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Answer: A: CNVkit Heatmap samples clustering
5.2 years ago by Eric T. ★ 2.8k
0
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1
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1.9k
views
Answer: A: Error in CNV Calling with Annotation
5.2 years ago by Eric T. ★ 2.8k
0
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1
reply
2.2k
views
Answer: A: Bootstrap function biopython
5.3 years ago by Eric T. ★ 2.8k
1
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0
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2.3k
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Answer: A: CNV calling from exome sequencing data with a low number of samples
5.5 years ago by Eric T. ★ 2.8k
0
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1
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6.4k
views
Comment: C: CNVkit for germline samples
5.6 years ago by Eric T. ★ 2.8k
0
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2
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6.4k
views
Comment: C: CNVkit for germline samples
5.6 years ago by Eric T. ★ 2.8k
0
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1
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6.4k
views
Answer: A: CNVkit for germline samples
5.6 years ago by Eric T. ★ 2.8k
1
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1
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1.8k
views
Answer: A: BioPython, PhyloXML and duplication nodes
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.8k
256 results • Page 1 of 6
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