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Answer: Answer: annotate CNVkit output
20 months ago by Eric T. ★ 2.8k
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698
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Answer: Answer: CNVKit on targeted amplicons with UMIs
20 months ago by Eric T. ★ 2.8k
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605
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Answer: Answer: CNVkit background(Noise)
20 months ago by Eric T. ★ 2.8k
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0
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931
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Answer: Answer: The exonix length calculated from the CNVkit bed files is several fold larger th
20 months ago by Eric T. ★ 2.8k
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0
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765
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Answer: A: CNVKit sex specification in controls pool
3.2 years ago by Eric T. ★ 2.8k
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0
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951
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Answer: A: CNVkit bwa-mem parameters
3.3 years ago by Eric T. ★ 2.8k
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1
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4.2k
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Answer: A: CNVKit noisy scatter plot
4.0 years ago by Eric T. ★ 2.8k
2
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1
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2.1k
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Answer: A: Calling CNA from aCGH: Thresholding?
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.8k
3
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1
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9.9k
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Answer: Answer: ABSOLUTE to estimate tumour purity from WES data
updated 16 months ago by 43k • written 8.3 years ago by ★ 2.8k
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0
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3.0k
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Answer: A: Using io.StringIO() with biopython Phylo parse
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 2.8k
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4.3k
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Answer: A: Germline CNV caller
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.8k
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0
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3.6k
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Answer: A: Regarding Pseudokinases
updated 4.6 years ago by 43k • written 12.5 years ago by ★ 2.8k
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1
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2.5k
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Answer: A: CNVKIT - unable to produce scatter and diagram pdfs
4.7 years ago by Eric T. ★ 2.8k
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0
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5.3k
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Answer: A: UK Biobank reference genome?
4.8 years ago by Eric T. ★ 2.8k
3
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1
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1.4k
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Answer: A: UK Biobank l2r data holds segment means but no segment locations?
4.8 years ago by Eric T. ★ 2.8k
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0
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1.5k
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Answer: A: CNV analysis for tumor panel
4.8 years ago by Eric T. ★ 2.8k
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0
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1.1k
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Answer: A: CNVkit - diagram problem
4.8 years ago by Eric T. ★ 2.8k
1
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2
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1.3k
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Answer: A: Noisy CNV background in old FFPE sample
4.8 years ago by Eric T. ★ 2.8k
1
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1
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1.9k
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Answer: A: Weights in cnvkit cnr output
4.8 years ago by Eric T. ★ 2.8k
2
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1
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2.6k
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Answer: A: cnvkit bgzf_read error 4 after 4 bytes
4.8 years ago by Eric T. ★ 2.8k
1
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0
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1.2k
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Answer: A: No CNV calls in CNVkit import-rna
5.0 years ago by Eric T. ★ 2.8k
4
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0
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2.8k
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Answer: A: CNVkit for somatic copy number detection
5.1 years ago by Eric T. ★ 2.8k
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2
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2.6k
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Answer: A: I got a problem with making normal reference using cnvkit
5.1 years ago by Eric T. ★ 2.8k
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0
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2.9k
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Answer: A: scatter plots with single chromosome gives IndexError
5.1 years ago by Eric T. ★ 2.8k
0
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1
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3.1k
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Answer: A: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.1 years ago by Eric T. ★ 2.8k
1
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1
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1.4k
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Answer: A: CNVkit- weird results when using the same sample as normal
5.1 years ago by Eric T. ★ 2.8k
1
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0
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1.3k
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Answer: A: Filtering number of markers after segmentation using DNAcopy
5.2 years ago by Eric T. ★ 2.8k
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1
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2.7k
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Answer: A: CNVkit: Dealing with noisy tumor samples
5.2 years ago by Eric T. ★ 2.8k
0
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0
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1.7k
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Answer: A: CNVkit Heatmap samples clustering
5.2 years ago by Eric T. ★ 2.8k
0
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1
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1.9k
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Answer: A: Error in CNV Calling with Annotation
5.2 years ago by Eric T. ★ 2.8k
0
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1
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2.2k
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Answer: A: Bootstrap function biopython
5.3 years ago by Eric T. ★ 2.8k
1
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0
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2.3k
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Answer: A: CNV calling from exome sequencing data with a low number of samples
5.6 years ago by Eric T. ★ 2.8k
0
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1
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6.4k
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Answer: A: CNVkit for germline samples
5.6 years ago by Eric T. ★ 2.8k
1
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1
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1.8k
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Answer: A: BioPython, PhyloXML and duplication nodes
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.8k
1
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0
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1.4k
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Answer: A: Copy number variant from SNP array
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.8k
8
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2
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11k
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Answer: A: Help with understanding CNVkit output
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.8k
2
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1
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7.6k
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Answer: A: Reproducible Research: A More General Sweave?
updated 5.6 years ago by 43k • written 9.4 years ago by ★ 2.8k
0
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0
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1.2k
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Answer: A: Running cnvkit batch with -y parameter
5.7 years ago by Eric T. ★ 2.8k
1
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0
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1.3k
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Answer: A: Best variant caller for CNVkit
5.7 years ago by Eric T. ★ 2.8k
1
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1
reply
1.6k
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Answer: A: CNVkit: gene results not in output
5.8 years ago by Eric T. ★ 2.8k
0
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2
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2.7k
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Answer: A: minus integer copy number when using --purity for cnvkit
5.9 years ago by Eric T. ★ 2.8k
2
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0
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1.5k
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Answer: A: Using CNVkit to identify poor-quality normal samples
5.9 years ago by Eric T. ★ 2.8k
0
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0
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1.9k
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Answer: A: Is there a way to plot both tumor and normal samples' copy number segments on t
6.0 years ago by Eric T. ★ 2.8k
1
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1
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1.6k
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Answer: A: a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
6.1 years ago by Eric T. ★ 2.8k
2
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1
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4.0k
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Answer: A: CNV detection using BAM file
6.1 years ago by Eric T. ★ 2.8k
1
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0
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1.7k
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Answer: A: Detect exon deletion/duplication from NGS amplicon
6.1 years ago by Eric T. ★ 2.8k
2
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0
replies
1.9k
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Answer: A: How to use DNAcopy package to analyze Affymetrix SNP array?
6.2 years ago by Eric T. ★ 2.8k
0
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0
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1.5k
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Answer: A: CNVkit segmetrics error
6.2 years ago by Eric T. ★ 2.8k
1
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0
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2.3k
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Answer: A: WGS coverage (depth) for CNV detection
6.2 years ago by Eric T. ★ 2.8k
2
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0
replies
2.5k
views
Answer: A: Regarding Cnvkit analysis
6.2 years ago by Eric T. ★ 2.8k
174 results • Page 1 of 4
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