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1
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0
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1.4k
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Answer:
A: Copy number variant from SNP array
updated 5.7 years ago by
Ram
43k • written 8.3 years ago by
Eric T.
★ 2.8k
8
votes
2
replies
11k
views
Answer:
A: Help with understanding CNVkit output
updated 5.7 years ago by
Ram
43k • written 8.2 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
7.7k
views
Answer:
A: Reproducible Research: A More General Sweave?
updated 5.7 years ago by
Ram
43k • written 9.5 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.2k
views
Answer:
A: Running cnvkit batch with -y parameter
5.7 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
1.3k
views
Answer:
A: Best variant caller for CNVkit
5.8 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.6k
views
Comment:
C: CNVkit: gene results not in output
5.8 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
1.6k
views
Answer:
A: CNVkit: gene results not in output
5.9 years ago by
Eric T.
★ 2.8k
0
votes
2
replies
2.7k
views
Answer:
A: minus integer copy number when using --purity for cnvkit
5.9 years ago by
Eric T.
★ 2.8k
2
votes
0
replies
1.5k
views
Answer:
A: Using CNVkit to identify poor-quality normal samples
6.0 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.9k
views
Answer:
A: Is there a way to plot both tumor and normal samples' copy number segments on t
6.0 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.4k
views
Comment:
C: CNV details about the normal samples?
6.0 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
1.6k
views
Answer:
A: a realiable algorithm that calls INDELS of length 50bp-300bp in cancer genomes
6.2 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
4.0k
views
Answer:
A: CNV detection using BAM file
6.2 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
1.7k
views
Answer:
A: Detect exon deletion/duplication from NGS amplicon
6.2 years ago by
Eric T.
★ 2.8k
2
votes
0
replies
1.9k
views
Answer:
A: How to use DNAcopy package to analyze Affymetrix SNP array?
6.2 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.5k
views
Answer:
A: CNVkit segmetrics error
6.2 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
2.4k
views
Answer:
A: WGS coverage (depth) for CNV detection
6.2 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
4.8k
views
Comment:
C: CNVkit : small CNV calling
6.2 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
3.5k
views
Comment:
C: Using THETA2 from CNVkit: what king of vcf do you need?
6.2 years ago by
Eric T.
★ 2.8k
2
votes
0
replies
2.5k
views
Answer:
A: Regarding Cnvkit analysis
6.3 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
3.6k
views
Comment:
C: CNVkit - how many normal samples do I need for the pooled normal reference?
6.3 years ago by
Eric T.
★ 2.8k
0
votes
1
reply
3.1k
views
Comment:
C: tumor/normal WGS with CNVkit has many small segments with small copy number chan
6.3 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
3.6k
views
Answer:
A: CNVkit - how many normal samples do I need for the pooled normal reference?
6.3 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.3k
views
Answer:
A: CNVKit - Gene labels in 'diagram'
6.3 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
5.3k
views
Answer:
A: visualize CNV data based on WGS
6.3 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
3.1k
views
Answer:
A: tumor/normal WGS with CNVkit has many small segments with small copy number chan
6.3 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
4.0k
views
Answer:
A: CNVKIT import errors
6.3 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
1.3k
views
Answer:
A: Any techniques faster than Breakdancer?
6.4 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
6.7k
views
Comment:
C: Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant
6.4 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
3.2k
views
Answer:
A: How to merge CNV of multiple samples from CNVkit
6.4 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.7k
views
Comment:
C: cnvkit segmetrics on multiple files
6.5 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
7.8k
views
Comment:
C: What does it mean to say "b-allele frequency"?
6.5 years ago by
Eric T.
★ 2.8k
2
votes
1
reply
3.1k
views
Answer:
A: WES germline CNV caller for trio analysis
6.5 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.7k
views
Answer:
A: cnvkit segmetrics on multiple files
6.5 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
1.6k
views
Answer:
A: Is cnvkit coverage output split into non-overlapping segments?
6.6 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
2.6k
views
Answer:
A: Precision of loss of heterozygosity detection with Sanger sequencing vs copy num
6.6 years ago by
Eric T.
★ 2.8k
0
votes
2
replies
6.5k
views
Comment:
C: CNVkit for germline samples
6.6 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
1.8k
views
Answer:
A: CNV calling on tumor sample with no germline counterpart
6.6 years ago by
Eric T.
★ 2.8k
3
votes
2
replies
2.5k
views
Answer:
A: Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
6.6 years ago by
Eric T.
★ 2.8k
0
votes
1
reply
6.5k
views
Comment:
C: CNVkit for germline samples
6.6 years ago by
Eric T.
★ 2.8k
0
votes
1
reply
6.5k
views
Comment:
C: CNVkit for germline samples
6.6 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
4.3k
views
Answer:
A: I need allele copy number information for running PyClone
6.6 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
2.5k
views
Answer:
A: cvnkit: what is the problem here?
6.6 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
6.4k
views
Comment:
C: How to import the output of CNVkit into GISTIC2.0 ?
6.6 years ago by
Eric T.
★ 2.8k
0
votes
0
replies
6.5k
views
Comment:
C: CNVkit for germline samples
6.7 years ago by
Eric T.
★ 2.8k
2
votes
2
replies
6.4k
views
Answer:
A: How to import the output of CNVkit into GISTIC2.0 ?
6.7 years ago by
Eric T.
★ 2.8k
1
vote
0
replies
3.7k
views
Answer:
A: Structural Variant annotation
6.7 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
1.8k
views
Answer:
A: Error due to annotation file while running target module from CNVkit tool
6.7 years ago by
Eric T.
★ 2.8k
0
votes
1
reply
2.9k
views
Answer:
A: amplicon based germline CNV caller
6.7 years ago by
Eric T.
★ 2.8k
1
vote
1
reply
2.3k
views
Answer:
A: Using CNVkit for hybrid capture data -- the huge CNV regions in results does not
6.7 years ago by
Eric T.
★ 2.8k
256 results • Page
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