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Help with Hmmscan
hmmer alignment blast metagenome hmmscan
4.6 years ago by Longshotx ▴ 70
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1.5k
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Comment: C: Using blast or similar tool to annotate ORFs using Bacmet database
4.6 years ago by Longshotx ▴ 70
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1.5k
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Comment: C: Using blast or similar tool to annotate ORFs using Bacmet database
4.6 years ago by Longshotx ▴ 70
0
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1
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1.5k
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Comment: C: Using blast or similar tool to annotate ORFs using Bacmet database
4.6 years ago by Longshotx ▴ 70
0
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1
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1.5k
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Comment: C: Using blast or similar tool to annotate ORFs using Bacmet database
4.6 years ago by Longshotx ▴ 70
1
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7
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1.5k
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Using blast or similar tool to annotate ORFs using Bacmet database
alignment annotation prodigal metagenome
updated 4.6 years ago by ★ 27k • written 4.6 years ago by ▴ 70
0
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0
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796
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Trying to find best way to determine co-occurence between taxa and genes related to antibiotic resistance.
statistics co-occurence R cytoscape
4.6 years ago by Longshotx ▴ 70
0
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1
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14k
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Comment: C: How to run several one-way ANOVAs in R using on different categories?
4.7 years ago by Longshotx ▴ 70
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1.1k
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Comment: C: Predicted Proteins: Mapping Reads to ORFs
4.7 years ago by Longshotx ▴ 70
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2
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1.1k
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Predicted Proteins: Mapping Reads to ORFs
prodigal mapping coverage counts Assembly
updated 4.7 years ago by 6.3k • written 4.7 years ago by ▴ 70
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0
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1.7k
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Comment: C: Get genes and coverage/depth per gene from sam/bam
4.7 years ago by Longshotx ▴ 70
25
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14
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14k
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11 follow
How to run several one-way ANOVAs in R using on different categories?
R gene statistics anova
updated 2.2 years ago by • 0 • written 4.9 years ago by ▴ 70
0
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1
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14k
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Comment: C: Question: How to run several one-way ANOVAs in R using on different categories?
4.9 years ago by Longshotx ▴ 70
1
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3
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1.8k
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Bulk quality interleaving with bbmap reformat command
bbmap bbduk reformat bash loop
updated 5.2 years ago by ▴ 10 • written 5.4 years ago by ▴ 70
0
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1
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6.6k
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Comment: C: Relative abundance fro metagenomics samples
5.3 years ago by Longshotx ▴ 70
5
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14
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4.1k
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Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
sequence gene taxonomy parsing
updated 7.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 70
0
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1
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3.3k
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Comment: C: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by Longshotx ▴ 70
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0
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3.3k
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Comment: C: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by Longshotx ▴ 70
0
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1
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3.3k
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Comment: C: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by Longshotx ▴ 70
0
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1
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3.3k
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Comment: C: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by Longshotx ▴ 70
7
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14
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3.3k
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What is the fastest way to add 'Ns' to variable length sequences in a .fasta such that they have the same length
sequencing fasta python biopython
updated 7.2 years ago by ★ 2.8k • written 7.2 years ago by ▴ 70
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2
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3.3k
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Comment: C: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by Longshotx ▴ 70
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0
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6.1k
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Comment: Comment: Parse Fastq File - Pad Reads With N'S
7.2 years ago by Longshotx ▴ 70
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0
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8.1k
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Comment: Comment: join non-overlapping paired-end reads
8.1 years ago by Longshotx ▴ 70
0
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1
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4.1k
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Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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1
reply
4.1k
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Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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1
reply
4.1k
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Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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1
reply
4.1k
views
Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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0
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4.1k
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Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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0
replies
4.1k
views
Comment: C: Help extracting the taxonomy for a file containing a list of accession numbers f
8.1 years ago by Longshotx ▴ 70
0
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0
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7.9k
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Comment: C: Extract Line Organism From Genbank File With A List Of Accession Number
8.1 years ago by Longshotx ▴ 70
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