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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 8 weeks ago by ★ 2.3k • written 5.6 years ago by ★ 3.1k
1
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1
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3.7k
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Comment: C: stringtie cannot recognize Gencode GTF
3.7 years ago by Sinji ★ 3.1k
2
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0
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1.1k
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Comment: C: bedops -u does not work properly
3.7 years ago by Sinji ★ 3.1k
0
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1
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1.1k
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Comment: C: bedops -u does not work properly
3.7 years ago by Sinji ★ 3.1k
0
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1
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1.1k
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Comment: C: bedops -u does not work properly
3.7 years ago by Sinji ★ 3.1k
0
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0
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959
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Answer: A: Detect LINE1 element in NGS data
3.8 years ago by Sinji ★ 3.1k
0
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0
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1.1k
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Comment: C: How to extract variable nucleotide regions from a list of contigs
3.8 years ago by Sinji ★ 3.1k
1
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1
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1.3k
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Comment: C: nextflow implementation of grape pipeline
3.8 years ago by Sinji ★ 3.1k
1
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2
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3.4k
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Comment: C: How Gro-seq identify enhancer RNA?
3.8 years ago by Sinji ★ 3.1k
3
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6
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5.2k
views
Trim galore terminates with exit signal: '256'
trim_galore cutadapt
updated 3.8 years ago by ▴ 390 • written 5.4 years ago by ★ 3.1k
5
votes
6
replies
4.2k
views
ChromHMM Output Descriptions
ChromHMM
updated 3.8 years ago by ▴ 40 • written 5.2 years ago by ★ 3.1k
1
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1
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5.7k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
3.8 years ago by Sinji ★ 3.1k
0
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0
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3.5k
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Comment: C: Identifying the orientation of a CTCF motif?
3.9 years ago by Sinji ★ 3.1k
4
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7
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3.5k
views
Identifying the orientation of a CTCF motif?
CTCF ChIP-Seq
updated 3.9 years ago by ▴ 210 • written 4.0 years ago by ★ 3.1k
1
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0
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35k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.2 years ago by Sinji ★ 3.1k
6
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3
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25k
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Answer: A: Snakemake vs. Nextflow: strengths and weaknesses
4.3 years ago by Sinji ★ 3.1k
2
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0
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2.4k
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Comment: C: Chip-seq peak annotation [Chipseeker]
4.3 years ago by Sinji ★ 3.1k
1
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1
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3.1k
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Comment: C: STAR installation make error
4.3 years ago by Sinji ★ 3.1k
1
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0
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790
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Answer: A: Peak ident near highly expressed genes
4.3 years ago by Sinji ★ 3.1k
0
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0
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2.8k
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Answer: A: chip-seq analysis and peak annotation
4.3 years ago by Sinji ★ 3.1k
3
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1
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3.5k
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Comment: C: Is annotation of enhancers to nearest gene pointless?
4.4 years ago by Sinji ★ 3.1k
6
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1
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3.5k
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Answer: A: Is annotation of enhancers to nearest gene pointless?
4.4 years ago by Sinji ★ 3.1k
0
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0
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2.4k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
4.4 years ago by Sinji ★ 3.1k
1
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0
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2.4k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
4.4 years ago by Sinji ★ 3.1k
1
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4
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2.4k
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BBMap: Number of reads out does not add up to number of reads in
bbmap
4.4 years ago by Sinji ★ 3.1k
1
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0
replies
3.7k
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Answer: A: Where can I download Human genome 38 as reference genome in RNA-seq?
4.4 years ago by Sinji ★ 3.1k
0
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0
replies
2.5k
views
Comment: C: error in macs2 usage
4.4 years ago by Sinji ★ 3.1k
0
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1
reply
1.1k
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Comment: C: EP300 ChIP-seq in the brain
4.4 years ago by Sinji ★ 3.1k
0
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1
reply
1.0k
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Comment: C: Long Motif Predicted by MEME SUITE
4.4 years ago by Sinji ★ 3.1k
1
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1
reply
1.0k
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Comment: C: Long Motif Predicted by MEME SUITE
4.4 years ago by Sinji ★ 3.1k
3
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7
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1.5k
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Does BBMap not include headers in BAM files?
bbmap
4.4 years ago by Sinji ★ 3.1k
1
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0
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1.5k
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Answer: A: Does BBMap not include headers in BAM files?
4.4 years ago by Sinji ★ 3.1k
0
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0
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1.5k
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Comment: C: Does BBMap not include headers in BAM files?
4.4 years ago by Sinji ★ 3.1k
0
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0
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1.5k
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Comment: C: Does BBMap not include headers in BAM files?
4.4 years ago by Sinji ★ 3.1k
0
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1
reply
1.5k
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Comment: C: Does BBMap not include headers in BAM files?
4.4 years ago by Sinji ★ 3.1k
0
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1
reply
1.5k
views
Comment: C: bedtools_intersect files sorting problem
4.4 years ago by Sinji ★ 3.1k
0
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1
reply
1.5k
views
Comment: C: bedtools_intersect files sorting problem
4.4 years ago by Sinji ★ 3.1k
1
vote
1
reply
2.2k
views
Comment: C: convert2bed issue with large input file?
4.4 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.9k
views
Comment: C: Genomic overlap using ChIPseeker enrichPeakOverlap
4.5 years ago by Sinji ★ 3.1k
1
vote
1
reply
2.2k
views
Answer: A: compare peaks in a gene list (coordinates)
4.5 years ago by Sinji ★ 3.1k
1
vote
1
reply
1.3k
views
Comment: C: Pipeline for detecting (TF) Chip-seq peaks in transposable elements?
4.5 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.1k
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Comment: C: how to filter ChIP-Seq peaks called by MACS based on the measurements?
4.6 years ago by Sinji ★ 3.1k
0
votes
0
replies
35k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.6 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.7k
views
Comment: C: STAR output processing
4.6 years ago by Sinji ★ 3.1k
2
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1
reply
1.1k
views
Comment: C: How to split a bed file according promoter window (-30 to 300bp)
4.6 years ago by Sinji ★ 3.1k
1
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1
reply
1.1k
views
Comment: C: How to split a bed file according promoter window (-30 to 300bp)
4.6 years ago by Sinji ★ 3.1k
0
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0
replies
5.4k
views
Comment: C: How to annotate TTS or TES
4.6 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.6k
views
Comment: C: Homer findMotifsGenome.pl error
4.6 years ago by Sinji ★ 3.1k
1
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1
reply
5.4k
views
Comment: C: How to annotate TTS or TES
4.6 years ago by Sinji ★ 3.1k
0
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1
reply
5.4k
views
Comment: C: How to annotate TTS or TES
4.6 years ago by Sinji ★ 3.1k
197 results • Page 1 of 4
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