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126
votes
46
replies
53k
views
21 follow
Forum:
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization
ChIP-Seq
homer
ngsplot
deeptools
updated 20 months ago by
Ram
44k • written 8.8 years ago by
Sinji
★ 3.2k
1
vote
1
reply
6.8k
views
Comment:
C: stringtie cannot recognize Gencode GTF
6.9 years ago by
Sinji
★ 3.2k
2
votes
0
replies
2.7k
views
Comment:
C: bedops -u does not work properly
6.9 years ago by
Sinji
★ 3.2k
0
votes
1
reply
2.7k
views
Comment:
C: bedops -u does not work properly
6.9 years ago by
Sinji
★ 3.2k
0
votes
1
reply
2.7k
views
Comment:
C: bedops -u does not work properly
6.9 years ago by
Sinji
★ 3.2k
0
votes
0
replies
1.6k
views
Answer:
A: Detect LINE1 element in NGS data
7.0 years ago by
Sinji
★ 3.2k
0
votes
0
replies
1.8k
views
Comment:
C: How to extract variable nucleotide regions from a list of contigs
7.0 years ago by
Sinji
★ 3.2k
1
vote
1
reply
2.4k
views
Comment:
C: nextflow implementation of grape pipeline
7.0 years ago by
Sinji
★ 3.2k
1
vote
2
replies
4.9k
views
Comment:
C: How Gro-seq identify enhancer RNA?
7.0 years ago by
Sinji
★ 3.2k
3
votes
6
replies
9.6k
views
Trim galore terminates with exit signal: '256'
trim_galore
cutadapt
updated 7.0 years ago by
ZheFrench
▴ 590 • written 8.6 years ago by
Sinji
★ 3.2k
7
votes
6
replies
7.0k
views
ChromHMM Output Descriptions
ChromHMM
updated 7.0 years ago by
Roman Hillje
▴ 100 • written 8.4 years ago by
Sinji
★ 3.2k
1
vote
1
reply
9.0k
views
Comment:
C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
7.0 years ago by
Sinji
★ 3.2k
0
votes
0
replies
6.4k
views
Comment:
C: Identifying the orientation of a CTCF motif?
7.1 years ago by
Sinji
★ 3.2k
5
votes
7
replies
6.4k
views
Identifying the orientation of a CTCF motif?
CTCF
ChIP-Seq
updated 7.1 years ago by
simon.vanheeringen
▴ 280 • written 7.1 years ago by
Sinji
★ 3.2k
1
vote
0
replies
53k
views
Comment:
C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.4 years ago by
Sinji
★ 3.2k
7
votes
3
replies
46k
views
Answer:
A: Snakemake vs. Nextflow: strengths and weaknesses
7.5 years ago by
Sinji
★ 3.2k
2
votes
0
replies
4.2k
views
Comment:
C: Chip-seq peak annotation [Chipseeker]
7.5 years ago by
Sinji
★ 3.2k
1
vote
1
reply
5.2k
views
Comment:
C: STAR installation make error
7.5 years ago by
Sinji
★ 3.2k
1
vote
0
replies
1.3k
views
Answer:
A: Peak ident near highly expressed genes
7.5 years ago by
Sinji
★ 3.2k
0
votes
0
replies
4.6k
views
Answer:
A: chip-seq analysis and peak annotation
7.5 years ago by
Sinji
★ 3.2k
3
votes
1
reply
6.6k
views
Comment:
C: Is annotation of enhancers to nearest gene pointless?
7.6 years ago by
Sinji
★ 3.2k
6
votes
1
reply
6.6k
views
Answer:
A: Is annotation of enhancers to nearest gene pointless?
7.6 years ago by
Sinji
★ 3.2k
0
votes
0
replies
3.5k
views
Comment:
C: BBMap: Number of reads out does not add up to number of reads in
7.6 years ago by
Sinji
★ 3.2k
1
vote
0
replies
3.5k
views
Comment:
C: BBMap: Number of reads out does not add up to number of reads in
7.6 years ago by
Sinji
★ 3.2k
1
vote
4
replies
3.5k
views
BBMap: Number of reads out does not add up to number of reads in
bbmap
7.6 years ago by
Sinji
★ 3.2k
1
vote
0
replies
5.8k
views
Answer:
A: Where can I download Human genome 38 as reference genome in RNA-seq?
7.6 years ago by
Sinji
★ 3.2k
0
votes
0
replies
4.2k
views
Comment:
C: error in macs2 usage
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
1.9k
views
Comment:
C: EP300 ChIP-seq in the brain
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
2.0k
views
Comment:
C: Long Motif Predicted by MEME SUITE
7.6 years ago by
Sinji
★ 3.2k
1
vote
1
reply
2.0k
views
Comment:
C: Long Motif Predicted by MEME SUITE
7.6 years ago by
Sinji
★ 3.2k
1
vote
0
replies
2.8k
views
Answer:
A: Does BBMap not include headers in BAM files?
7.6 years ago by
Sinji
★ 3.2k
3
votes
7
replies
2.8k
views
Does BBMap not include headers in BAM files?
bbmap
7.6 years ago by
Sinji
★ 3.2k
0
votes
0
replies
2.8k
views
Comment:
C: Does BBMap not include headers in BAM files?
7.6 years ago by
Sinji
★ 3.2k
0
votes
0
replies
2.8k
views
Comment:
C: Does BBMap not include headers in BAM files?
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
2.8k
views
Comment:
C: Does BBMap not include headers in BAM files?
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
3.0k
views
Comment:
C: bedtools_intersect files sorting problem
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
3.0k
views
Comment:
C: bedtools_intersect files sorting problem
7.6 years ago by
Sinji
★ 3.2k
1
vote
1
reply
4.2k
views
Comment:
C: convert2bed issue with large input file?
7.6 years ago by
Sinji
★ 3.2k
0
votes
1
reply
3.4k
views
Comment:
C: Genomic overlap using ChIPseeker enrichPeakOverlap
7.7 years ago by
Sinji
★ 3.2k
1
vote
1
reply
3.4k
views
Answer:
A: compare peaks in a gene list (coordinates)
7.7 years ago by
Sinji
★ 3.2k
1
vote
1
reply
2.1k
views
Comment:
C: Pipeline for detecting (TF) Chip-seq peaks in transposable elements?
7.7 years ago by
Sinji
★ 3.2k
0
votes
0
replies
3.4k
views
Comment:
C: how to filter ChIP-Seq peaks called by MACS based on the measurements?
7.8 years ago by
Sinji
★ 3.2k
0
votes
0
replies
53k
views
Comment:
C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.8 years ago by
Sinji
★ 3.2k
0
votes
0
replies
3.7k
views
Comment:
C: STAR output processing
7.8 years ago by
Sinji
★ 3.2k
2
votes
1
reply
2.0k
views
Comment:
C: How to split a bed file according promoter window (-30 to 300bp)
7.8 years ago by
Sinji
★ 3.2k
1
vote
1
reply
2.0k
views
Comment:
C: How to split a bed file according promoter window (-30 to 300bp)
7.8 years ago by
Sinji
★ 3.2k
0
votes
0
replies
10k
views
Comment:
C: How to annotate TTS or TES
7.8 years ago by
Sinji
★ 3.2k
0
votes
0
replies
3.5k
views
Comment:
C: Homer findMotifsGenome.pl error
7.8 years ago by
Sinji
★ 3.2k
1
vote
1
reply
10k
views
Comment:
C: How to annotate TTS or TES
7.8 years ago by
Sinji
★ 3.2k
0
votes
1
reply
10k
views
Comment:
C: How to annotate TTS or TES
7.8 years ago by
Sinji
★ 3.2k
197 results • Page
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