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Forum:  Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 18 months ago by ▴ 230 • written 5.3 years ago by ★ 3.1k
1
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1
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3.5k
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Comment:  C: stringtie cannot recognize Gencode GTF
3.5 years ago by Sinji ★ 3.1k
2
votes
0
replies
958
views
Comment:  C: bedops -u does not work properly
3.5 years ago by Sinji ★ 3.1k
0
votes
1
reply
958
views
Comment:  C: bedops -u does not work properly
3.5 years ago by Sinji ★ 3.1k
0
votes
1
reply
958
views
Comment:  C: bedops -u does not work properly
3.5 years ago by Sinji ★ 3.1k
0
votes
0
replies
900
views
Answer:  A: Detect LINE1 element in NGS data
3.5 years ago by Sinji ★ 3.1k
0
votes
0
replies
1.1k
views
Comment:  C: How to extract variable nucleotide regions from a list of contigs
3.5 years ago by Sinji ★ 3.1k
1
vote
1
reply
1.2k
views
Comment:  C: nextflow implementation of grape pipeline
3.5 years ago by Sinji ★ 3.1k
1
vote
2
replies
3.2k
views
Comment:  C: How Gro-seq identify enhancer RNA?
3.6 years ago by Sinji ★ 3.1k
3
votes
6
replies
4.8k
views
  Trim galore terminates with exit signal: '256'
trim_galore cutadapt
updated 3.6 years ago by ▴ 360 • written 5.1 years ago by ★ 3.1k
5
votes
6
replies
3.9k
views
  ChromHMM Output Descriptions
ChromHMM
updated 3.6 years ago by ▴ 40 • written 4.9 years ago by ★ 3.1k
1
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1
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5.5k
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Comment:  C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
3.6 years ago by Sinji ★ 3.1k
0
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0
replies
3.3k
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Comment:  C: Identifying the orientation of a CTCF motif?
3.7 years ago by Sinji ★ 3.1k
4
votes
7
replies
3.3k
views
  Identifying the orientation of a CTCF motif?
CTCF ChIP-Seq
updated 3.7 years ago by ▴ 200 • written 3.7 years ago by ★ 3.1k
1
vote
0
replies
34k
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Comment:  C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.0 years ago by Sinji ★ 3.1k
6
votes
3
replies
23k
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Answer:  A: Snakemake vs. Nextflow: strengths and weaknesses
4.0 years ago by Sinji ★ 3.1k
2
votes
0
replies
2.2k
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Comment:  C: Chip-seq peak annotation [Chipseeker]
4.0 years ago by Sinji ★ 3.1k
1
vote
1
reply
2.9k
views
Comment:  C: STAR installation make error
4.1 years ago by Sinji ★ 3.1k
1
vote
0
replies
756
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Answer:  A: Peak ident near highly expressed genes
4.1 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.7k
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Answer:  A: chip-seq analysis and peak annotation
4.1 years ago by Sinji ★ 3.1k
3
votes
1
reply
3.4k
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Comment:  C: Is annotation of enhancers to nearest gene pointless?
4.1 years ago by Sinji ★ 3.1k
6
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1
reply
3.4k
views
Answer:  A: Is annotation of enhancers to nearest gene pointless?
4.1 years ago by Sinji ★ 3.1k
0
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0
replies
2.3k
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Comment:  C: BBMap: Number of reads out does not add up to number of reads in
4.1 years ago by Sinji ★ 3.1k
1
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0
replies
2.3k
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Comment:  C: BBMap: Number of reads out does not add up to number of reads in
4.1 years ago by Sinji ★ 3.1k
1
vote
4
replies
2.3k
views
  BBMap: Number of reads out does not add up to number of reads in
bbmap
4.1 years ago by Sinji ★ 3.1k
1
vote
0
replies
3.5k
views
Answer:  A: Where can I download Human genome 38 as reference genome in RNA-seq?
4.1 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.3k
views
Comment:  C: error in macs2 usage
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.1k
views
Comment:  C: EP300 ChIP-seq in the brain
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
955
views
Comment:  C: Long Motif Predicted by MEME SUITE
4.2 years ago by Sinji ★ 3.1k
1
vote
1
reply
955
views
Comment:  C: Long Motif Predicted by MEME SUITE
4.2 years ago by Sinji ★ 3.1k
1
vote
0
replies
1.4k
views
Answer:  A: Does BBMap not include headers in BAM files?
4.2 years ago by Sinji ★ 3.1k
3
votes
7
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1.4k
views
  Does BBMap not include headers in BAM files?
bbmap
4.2 years ago by Sinji ★ 3.1k
0
votes
0
replies
1.4k
views
Comment:  C: Does BBMap not include headers in BAM files?
4.2 years ago by Sinji ★ 3.1k
0
votes
0
replies
1.4k
views
Comment:  C: Does BBMap not include headers in BAM files?
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.4k
views
Comment:  C: Does BBMap not include headers in BAM files?
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.4k
views
Comment:  C: bedtools_intersect files sorting problem
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.4k
views
Comment:  C: bedtools_intersect files sorting problem
4.2 years ago by Sinji ★ 3.1k
1
vote
1
reply
2.1k
views
Comment:  C: convert2bed issue with large input file?
4.2 years ago by Sinji ★ 3.1k
0
votes
1
reply
1.8k
views
Comment:  C: Genomic overlap using ChIPseeker enrichPeakOverlap
4.2 years ago by Sinji ★ 3.1k
1
vote
1
reply
2.2k
views
Answer:  A: compare peaks in a gene list (coordinates)
4.2 years ago by Sinji ★ 3.1k
1
vote
1
reply
1.2k
views
Comment:  C: Pipeline for detecting (TF) Chip-seq peaks in transposable elements?
4.3 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.0k
views
Comment:  C: how to filter ChIP-Seq peaks called by MACS based on the measurements?
4.3 years ago by Sinji ★ 3.1k
0
votes
0
replies
34k
views
Comment:  C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.3 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.6k
views
Comment:  C: STAR output processing
4.3 years ago by Sinji ★ 3.1k
2
votes
1
reply
1.0k
views
Comment:  C: How to split a bed file according promoter window (-30 to 300bp)
4.3 years ago by Sinji ★ 3.1k
1
vote
1
reply
1.0k
views
Comment:  C: How to split a bed file according promoter window (-30 to 300bp)
4.3 years ago by Sinji ★ 3.1k
0
votes
0
replies
5.0k
views
Comment:  C: How to annotate TTS or TES
4.3 years ago by Sinji ★ 3.1k
0
votes
0
replies
2.4k
views
Comment:  C: Homer findMotifsGenome.pl error
4.3 years ago by Sinji ★ 3.1k
1
vote
1
reply
5.0k
views
Comment:  C: How to annotate TTS or TES
4.3 years ago by Sinji ★ 3.1k
0
votes
1
reply
5.0k
views
Comment:  C: How to annotate TTS or TES
4.3 years ago by Sinji ★ 3.1k
197 results • Page 1 of 4
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