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Answer: Answer: Before or after LD clumping for PRS calculation in GWAS
8 weeks ago by Sam ★ 4.7k
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0
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617
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Comment: Comment: PRSice and R lm() show different association analysis output (coefficient, SE an
12 weeks ago by Sam ★ 4.7k
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0
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415
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Answer: Answer: Interpretation of PRS scores calculated from PGS Catalog
3 months ago by Sam ★ 4.7k
1
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2
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617
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Comment: Comment: PRSice and R lm() show different association analysis output (coefficient, SE an
3 months ago by Sam ★ 4.7k
0
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0
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335
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Comment: Comment: Can you compare PRS scores that were calculated with different amounts of non mi
3 months ago by Sam ★ 4.7k
0
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1
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1.5k
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Comment: Comment: Merge Score in plink
3 months ago by Sam ★ 4.7k
4
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0
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614
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Answer: Answer: Does anyone know which tool can I use to generate the chart in the picture?
6 months ago by Sam ★ 4.7k
2
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1
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684
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Answer: Answer: Calculating height prediction from PGS
3 months ago by Sam ★ 4.7k
0
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0
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612
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Comment: Comment: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
10 months ago by Sam ★ 4.7k
1
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0
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645
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Answer: Answer: Genetic risk score calculated using SNPs with mixed effect directions
14 months ago by Sam ★ 4.7k
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0
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737
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Comment: Comment: Free access European cohort study
15 months ago by Sam ★ 4.7k
0
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0
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875
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Answer: Answer: Manual Polygenic Risk Score calculation
15 months ago by Sam ★ 4.7k
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0
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3.1k
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Comment: Comment: PRSice: how to obtain exact list of SNPs used for PRSice.best
16 months ago by Sam ★ 4.7k
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0
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761
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Answer: Answer: PLINK - tutorial - PRS calculation
17 months ago by Sam ★ 4.7k
0
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0
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803
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Answer: Answer: instead of linear regression, do logistic regression plink prs tutorial.
17 months ago by Sam ★ 4.7k
0
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0
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1.2k
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Comment: Comment: Error: No valid entries in --score file. [PLINK]
18 months ago by Sam ★ 4.7k
2
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0
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534
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Answer: Answer: Get variant type from genotype data
18 months ago by Sam ★ 4.7k
3
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1
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956
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Answer: Answer: PRSice-2 Documentation
19 months ago by Sam ★ 4.7k
4
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1
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1.3k
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Answer: Answer: What is the best way to read PLINK .raw format files into R?
19 months ago by Sam ★ 4.7k
0
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0
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799
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Answer: Answer: PRSice: Error in getopt(spec = spec, opt = args) : long flag "cov" is ambiguous
19 months ago by Sam ★ 4.7k
0
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0
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1.6k
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Comment: Comment: Problem with including covariates in PRS analysis using PRSice
19 months ago by Sam ★ 4.7k
0
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0
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3.8k
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Comment: Comment: PRS regression and covariates
21 months ago by Sam ★ 4.7k
2
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1
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578
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Answer: Answer: Number of SNPs included in the PRS calculation (PRSice)
2.0 years ago by Sam ★ 4.7k
1
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1
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739
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Answer: Answer: PRSice clumping was not processed for almost 9 hours with a stopped progress rat
2.1 years ago by Sam ★ 4.7k
0
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1
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1.1k
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Comment: Comment: How to dupicate a sample entry in VCF files or PLINK
2.2 years ago by Sam ★ 4.7k
0
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1
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1.1k
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Comment: Comment: How to dupicate a sample entry in VCF files or PLINK
2.2 years ago by Sam ★ 4.7k
0
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0
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680
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Comment: Comment: Polygenic risk scores from different GWAS studies
2.2 years ago by Sam ★ 4.7k
1
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1
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680
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Answer: Answer: Polygenic risk scores from different GWAS studies
2.2 years ago by Sam ★ 4.7k
2
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1
reply
1.1k
views
Answer: Answer: Help a beginner, results from plink logistic regression don't seem to make sense
updated 14 months ago by 43k • written 2.2 years ago by ★ 4.7k
0
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0
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589
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Comment: Comment: KING relatedness inference hanging
2.2 years ago by Sam ★ 4.7k
0
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2
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4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.2 years ago by Sam ★ 4.7k
0
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1
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4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.2 years ago by Sam ★ 4.7k
3
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0
replies
855
views
Answer: Answer: PLINK dosage gives some "NA"s for dichotomic and continuous outcome after analys
2.2 years ago by Sam ★ 4.7k
1
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1
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855
views
Comment: Comment: PLINK dosage gives some "NA"s for dichotomic and continuous outcome after analys
2.2 years ago by Sam ★ 4.7k
0
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1
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4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.2 years ago by Sam ★ 4.7k
0
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0
replies
1.9k
views
Comment: Comment: How to Install PRISice
2.3 years ago by Sam ★ 4.7k
1
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1
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1.9k
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Comment: Comment: How to Install PRISice
2.3 years ago by Sam ★ 4.7k
0
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0
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2.0k
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Comment: Comment: --chr-set PLINK
2.3 years ago by Sam ★ 4.7k
0
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1
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4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.3 years ago by Sam ★ 4.7k
0
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1
reply
998
views
Answer: Answer: How do I use PLINK to filter out SNPs?
2.3 years ago by Sam ★ 4.7k
0
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1
reply
1.1k
views
Comment: Comment: GWAS and Hetrozigosity
2.3 years ago by Sam ★ 4.7k
0
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1
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1.1k
views
Comment: Comment: GWAS and Hetrozigosity
2.3 years ago by Sam ★ 4.7k
3
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1
reply
1.5k
views
Answer: Answer: Merge Score in plink
2.3 years ago by Sam ★ 4.7k
0
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1
reply
4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.3 years ago by Sam ★ 4.7k
2
votes
1
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1.6k
views
Answer: Answer: How to open the genotype information in a bed file in R or Ubuntu
2.3 years ago by Sam ★ 4.7k
0
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1
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4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.3 years ago by Sam ★ 4.7k
0
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1
reply
4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.3 years ago by Sam ★ 4.7k
0
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2
replies
4.5k
views
Comment: Comment: Plink 2 user error converting .bgen to bcf
2.3 years ago by Sam ★ 4.7k
1
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0
replies
1.1k
views
Comment: Comment: Why the polygenic risk scores calculated by Plink and PRSice-2 are different
2.3 years ago by Sam ★ 4.7k
0
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0
replies
2.5k
views
Comment: Comment: Clumping error Plink
2.3 years ago by Sam ★ 4.7k
644 results • Page 1 of 13
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