Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.1k
views
Comment: Comment: What metrics to use for comparing alignment-based methods and variant calling fo
3.6 years ago by liorglic ★ 1.5k
3
votes
1
reply
3.1k
views
Answer: Answer: What do we call a transcript?
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
972
views
Comment: Comment: Genotypes in vcf files
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
3.7k
views
Answer: Answer: FastQC for paired end data
3.6 years ago by liorglic ★ 1.5k
1
vote
1
reply
1.9k
views
Comment: Comment: Filter isoforms before or after genome annotation
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
1.9k
views
Comment: Comment: Plant de novo genome assembly of illumina reads on linux
3.6 years ago by liorglic ★ 1.5k
1
vote
2
replies
1.9k
views
Answer: Answer: Plant de novo genome assembly of illumina reads on linux
3.6 years ago by liorglic ★ 1.5k
1
vote
1
reply
1.9k
views
Comment: Comment: Filter isoforms before or after genome annotation
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.1k
views
Comment: Comment: Is there any way to determine if a gene is due to contamination?
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
7.7k
views
Comment: Comment: Trouble with bedtools getfasta
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
7.7k
views
Comment: Comment: Trouble with bedtools getfasta
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
7.7k
views
Comment: Comment: Trouble with bedtools getfasta
updated 3.6 years ago by 45k • written 3.6 years ago by ★ 1.5k
0
votes
0
replies
2.5k
views
Answer: Answer: Re-assembly assembled genomes
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
1.4k
views
Comment: Comment: Bam in python
3.6 years ago by liorglic ★ 1.5k
1
vote
1
reply
1.4k
views
Answer: Answer: Bam in python
3.6 years ago by liorglic ★ 1.5k
1
vote
2
replies
952
views
NGS sequencing depth notation
NGS depth
updated 3.6 years ago by 103k • written 3.6 years ago by ★ 1.5k
3
votes
1
reply
2.2k
views
Answer: Answer: Using snakemake to download split-reads by SRA number
3.6 years ago by liorglic ★ 1.5k
2
votes
1
reply
1.2k
views
Answer: Answer: Why should we remove recombinant regions when we construct phylogenetic tree?
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
684
views
Comment: Comment: Incorporate SNP/Indel and generate new sequence from original reference gene seq
3.6 years ago by liorglic ★ 1.5k
3
votes
1
reply
1.5k
views
Answer: Answer: Can I execute a snakemake rule only once?
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
845
views
Comment: Comment: studying similarity
3.6 years ago by liorglic ★ 1.5k
3
votes
0
replies
816
views
Answer: Answer: SeqIO object get cleared away after being accessed
3.6 years ago by liorglic ★ 1.5k
1
vote
0
replies
2.0k
views
Comment: Comment: How can I extract part of the DNA sequences that align to a specific region in t
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
1.8k
views
Comment: Comment: How is genome coverage / depth is determined?
3.6 years ago by liorglic ★ 1.5k
1
vote
2
replies
1.8k
views
Comment: Comment: How is genome coverage / depth is determined?
3.6 years ago by liorglic ★ 1.5k
1
vote
0
replies
5.1k
views
Answer: Answer: Fastest way to parse through a fasta file in python
3.6 years ago by liorglic ★ 1.5k
1
vote
1
reply
2.1k
views
Comment: Comment: Merging two sets of NGS reads
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.4k
views
Comment: Comment: String values replace in python data frame
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
2.1k
views
Comment: Comment: Merging two sets of NGS reads
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
2.4k
views
Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
769
views
Answer: Answer: How to determine the best assembly with number of N in the sequence and how to f
3.6 years ago by liorglic ★ 1.5k
0
votes
1
reply
2.4k
views
Comment: Comment: Unsupervised hierarchical clustering of DEG in Rstudio
3.6 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: Comment: Iso-seq mapping and annotation
3.7 years ago by liorglic ★ 1.5k
0
votes
0
replies
975
views
Answer: Answer: Does it necessary to use both forward and reverse fastq input files in kmergnie?
3.7 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.1k
views
Answer: Answer: How extract a specific part of sequence from a gtf file?
3.7 years ago by liorglic ★ 1.5k
1
vote
0
replies
907
views
Answer: Answer: [Beginner] Whole Genome Sequence Assembly: Where do I start?
3.7 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: Comment: how to discover the dissimilar regions in alignment using pyhton?
3.7 years ago by liorglic ★ 1.5k
1
vote
0
replies
1.3k
views
Answer: Answer: How to not align reverse complementary reads?
3.7 years ago by liorglic ★ 1.5k
0
votes
1
reply
2.4k
views
Comment: Comment: How to solve Non-unique top level ID error in Maker annotation pipeline ?
3.7 years ago by liorglic ★ 1.5k
1
vote
0
replies
19k
views
Answer: Answer: How to get FASTQ reads from the Short Read Archive (SRA)
3.7 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.8k
views
Comment: Comment: Paired-end reads
3.7 years ago by liorglic ★ 1.5k
1
vote
3
replies
1.5k
views
Clumpify on multiple files
dedupe clumpify fastq
3.7 years ago by liorglic ★ 1.5k
1
vote
0
replies
1.5k
views
Answer: Answer: Clumpify on multiple files
3.7 years ago by liorglic ★ 1.5k
1
vote
0
replies
5.6k
views
Comment: Comment: It seems that 'fastuniq' does not support fq.gz files. How to solve this except
3.7 years ago by liorglic ★ 1.5k
0
votes
0
replies
1.5k
views
Comment: Comment: Clumpify on multiple files
3.7 years ago by liorglic ★ 1.5k
2
votes
1
reply
1.6k
views
Answer: Answer: Do I need to trim the reads on samples with <0.2% adapter content?
3.7 years ago by liorglic ★ 1.5k
0
votes
1
reply
1.6k
views
Answer: Answer: Read multiple VCF files through PyVCF
3.7 years ago by liorglic ★ 1.5k
0
votes
1
reply
1.3k
views
Comment: Comment: Data sets of WGS + disease phenotypes?
3.7 years ago by liorglic ★ 1.5k
1
vote
3
replies
1.3k
views
Data sets of WGS + disease phenotypes?
wgs phenotype
updated 3.7 years ago by ▴ 190 • written 3.7 years ago by ★ 1.5k
284 results • Page 3 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6