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How To Use Maf Files In The Absolute Software
maf tcga copynumber mutation somatic
updated 4.7 years ago by • 0 • written 11.6 years ago by ▴ 640
0
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1
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7.2k
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Comment: C: Pindel Somatic Calls?
updated 5.7 years ago by 45k • written 10.8 years ago by ▴ 640
0
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1
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7.2k
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Comment: C: Pindel Somatic Calls?
updated 5.7 years ago by 45k • written 10.8 years ago by ▴ 640
2
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2
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7.2k
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Comment: A: Pindel Somatic Calls?
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 640
1
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1
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3.8k
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Answer: A: Seeking tool for identifying hybridization probes in gDNA -- more like Southern
updated 5.7 years ago by 45k • written 11.3 years ago by ▴ 640
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0
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4.2k
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Comment: C: Breakdancer Max Kahan Error:0
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 640
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0
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8.7k
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Comment: A: GATK-Depth of Coverage - Issue with per gene coverage
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 640
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0
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3.1k
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Comment: C: Pindel Segmentation Fault Error
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 640
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1
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21k
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Answer: A: How to read .bam file in Rsamtools R package?
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 640
0
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1
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10k
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Comment: C: Minimum requirements for a laptop for RNA-seq
updated 5.7 years ago by 45k • written 9.7 years ago by ▴ 640
4
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0
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11k
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Answer: A: how to quickly extract sequence from genome positions
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 640
2
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0
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28k
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Comment: C: The New Grch38 Human Genome Browser Has Arrived!
updated 5.8 years ago by 45k • written 10.0 years ago by ▴ 640
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0
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13k
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Comment: C: Capping coverage in bam file
updated 5.8 years ago by 45k • written 10.1 years ago by ▴ 640
0
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0
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13k
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Comment: C: Capping coverage in bam file
updated 5.8 years ago by 45k • written 10.1 years ago by ▴ 640
4
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1
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7.2k
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Answer: A: Pindel Somatic Calls?
updated 6.3 years ago by 89k • written 11.5 years ago by ▴ 640
0
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2
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7.6k
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Answer: A: Obtaining bam files from ICGC or TCGC
9.5 years ago by Danielk ▴ 640
0
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1
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7.9k
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Comment: C: htslib C API: getting reads from region
9.7 years ago by Danielk ▴ 640
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0
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6.4k
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Comment: C: Merge VCF files using bcftools merge
9.9 years ago by Danielk ▴ 640
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1
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11k
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Comment: C: Finding the iIllumina index read from raw fastq file
9.9 years ago by Danielk ▴ 640
4
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1
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11k
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Answer: Answer: Finding the iIllumina index read from raw fastq file
updated 3.0 years ago by 45k • written 9.9 years ago by ▴ 640
1
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0
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5.5k
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Comment: Comment: BICseq R package problem
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 640
0
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0
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2.8k
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Comment: Comment: Meaning of abbreviations of last-follow-up status in the 2000 breast cancer data
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 640
25
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16
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13k
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Capping coverage in bam file
downsample bam coverage
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 640
1
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1
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13k
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Comment: Comment: Capping coverage in bam file
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 640
0
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1
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13k
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Comment: C: Capping coverage in bam file
10.1 years ago by Danielk ▴ 640
0
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0
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4.6k
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Comment: Comment: picardmetrics: Run Picard tools and collate the outputs into one file.
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 640
0
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1
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3.0k
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Answer: Answer: Convert Indel format in vcf
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 640
1
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0
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5.7k
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Comment: Comment: VCF to MAF conversion for ABSOLUTE
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 640
0
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1
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5.7k
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Comment: Comment: VCF to MAF conversion for ABSOLUTE
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 640
1
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1
reply
8.1k
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Comment: C: transpose rows and columns
updated 4.5 years ago by 45k • written 10.4 years ago by ▴ 640
1
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1
reply
2.9k
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Answer: Answer: 200 vs 400 bp Ion Torrent
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 640
3
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0
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15k
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Answer: Answer: Preferred Tools For Making Analysis Pipeline Flowchart ?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 640
0
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0
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26k
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Comment: Comment: Bioinformatics "Cheat Sheet"
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 640
3
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1
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5.8k
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Comment: Comment: Integrating HTSeq count data of different samples
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 640
0
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0
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2.5k
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Comment: Comment: quantifying ribosomal content in Illumina libraries
updated 3.5 years ago by 45k • written 10.5 years ago by ▴ 640
0
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1
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2.5k
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Comment: Comment: quantifying ribosomal content in Illumina libraries
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 640
0
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1
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7.5k
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Answer: Answer: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
updated 3.4 years ago by 45k • written 10.5 years ago by ▴ 640
1
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1
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2.5k
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Answer: Answer: quantifying ribosomal content in Illumina libraries
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 640
0
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0
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6.6k
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Comment: Comment: PopGenome...ReadVCF. Cannot open the file. Why?
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 640
0
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0
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7.2k
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Comment: Comment: Pindel Somatic Calls?
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
0
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0
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5.5k
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Answer: Answer: Ryan Poplin of GATK uses this
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 640
1
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1
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3.1k
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Comment: Comment: Negative score in TCGA pancancer gene expression data
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
1
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0
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10k
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Comment: Comment: Principles of Tidy Data (Hadley Wickham) and the VCF format
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
0
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1
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10k
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Comment: Comment: Principles of Tidy Data (Hadley Wickham) and the VCF format
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
0
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1
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2.8k
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BamUtil for Base Qual Recalibration
recalibration recal bqsr basequal gatk
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
7
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4
replies
4.2k
views
Abra for indel realignment
realignment abra gatk
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 640
0
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1
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2.8k
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Comment: Comment: How to get coverage ratio?
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 640
1
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1
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2.8k
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Answer: Answer: How to get coverage ratio?
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 640
0
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0
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5.3k
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Comment: Comment: "Copy Number Variation" detection in Tumor only sample
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 640
0
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1
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3.1k
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Comment: Comment: Pindel Segmentation Fault During Sorting and Outputting Tandem Duplications
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 640
72 results • Page 1 of 2
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