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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
8 weeks ago by ATpoint 82k
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388
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Answer: Answer: Demonstrating lack of difference between two peaksets
9 weeks ago by ATpoint 82k
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252
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Answer: Answer: Having problems doing the Hisat2 alignment
9 weeks ago by ATpoint 82k
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385
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Answer: Answer: p-value on excel for different number of mutant samples vs WT samples
9 weeks ago by ATpoint 82k
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328
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Answer: Answer: Deal with the mapping problem for deviding bins
10 weeks ago by ATpoint 82k
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539
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Answer: Answer: Salmon
10 weeks ago by ATpoint 82k
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586
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Answer: Answer: minimap2 gets killed, but it doesn't explain why
10 weeks ago by ATpoint 82k
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382
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Answer: Answer: Choosing right GSEA background gene sets
10 weeks ago by ATpoint 82k
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284
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Answer: Answer: DESEQ2 Code
10 weeks ago by ATpoint 82k
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317
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Answer: Answer: A question about using HISAT2 without biological replicates
11 weeks ago by ATpoint 82k
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348
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Answer: Answer: samtools faidx not finding my modified sequence
11 weeks ago by ATpoint 82k
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231
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Answer: Answer: Extract single chromosome reads from Bam file
12 weeks ago by ATpoint 82k
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358
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Answer: Answer: model.matrix in EdgeR to account for batch effects with multiple samples
12 weeks ago by ATpoint 82k
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356
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Answer: Answer: Normalization of BIg wig file
12 weeks ago by ATpoint 82k
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410
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Answer: Answer: Difference in count values depends on tool and reference genome version
12 weeks ago by ATpoint 82k
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286
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Answer: Answer: Linux dependencies in Docker file
12 weeks ago by ATpoint 82k
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571
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Answer: Answer: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
3 months ago by ATpoint 82k
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371
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Answer: Answer: scRNA-seq downstream analysis on raw vs batch corrected counts
3 months ago by ATpoint 82k
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609
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Answer: Answer: Three fastq files
3 months ago by ATpoint 82k
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605
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Answer: Answer: A lot of unknown/weird gene names after alignment with cellranger or starsolo
3 months ago by ATpoint 82k
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407
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Answer: Answer: Differential expression analysis of lncRNA
3 months ago by ATpoint 82k
2
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0
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271
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Answer: Answer: Optimal MACS2/3 configuration for paired-end ChIP-seq data: `-f BAM` versus `-f
3 months ago by ATpoint 82k
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0
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265
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Answer: Answer: DESeq2 and Gene Set Enrichment Analysis
3 months ago by ATpoint 82k
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503
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Answer: Answer: Trouble with samtools view not filtering specified regions of bam file
3 months ago by ATpoint 82k
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1
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594
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Answer: Answer: sam file error
3 months ago by ATpoint 82k
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334
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Answer: Answer: will the features.tsv file from 10X chromium be same for all donor individuals?
3 months ago by ATpoint 82k
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523
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Answer: Answer: FASTQ-DUMP error while downloading HGDP datadset
3 months ago by ATpoint 82k
2
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767
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Answer: Answer: where to work as a bioinformatician (NGS/IA)
4 months ago by ATpoint 82k
2
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290
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Answer: Answer: RNA-seq DE analysis: repeated measures design (options available, mixed models?)
4 months ago by ATpoint 82k
2
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0
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333
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Answer: Answer: Input for Deseq2 for downstream analysis
4 months ago by ATpoint 82k
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245
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Answer: Answer: How to interpret Per sequence GC content in FastQC for ChIP-seq data?
4 months ago by ATpoint 82k
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1
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600
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Answer: Answer: problem with importing mtx file in scanpy
4 months ago by ATpoint 82k
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2
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768
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Answer: Answer: DESeq2 heatmap with low baseMean values
4 months ago by ATpoint 82k
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2
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910
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Answer: Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
4 months ago by ATpoint 82k
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562
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Answer: Answer: Difference between clipping and without clipping in Fastq-dump
4 months ago by ATpoint 82k
2
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502
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Answer: Answer: Method of combining replicate data for signal track visualization
4 months ago by ATpoint 82k
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545
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Answer: Answer: Indexing error using Salmon
4 months ago by ATpoint 82k
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0
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789
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Answer: Answer: Reference genome, BWA and right algorithm
4 months ago by ATpoint 82k
2
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0
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536
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Answer: Answer: Best way to look for gene signature in RNA-seq dataset
4 months ago by ATpoint 82k
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659
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Answer: Answer: zika virus effect
4 months ago by ATpoint 82k
3
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1
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779
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Answer: Answer: sc-RNA seq DATA
4 months ago by ATpoint 82k
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1
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606
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Answer: Answer: How can I normalize miRNA read count from TCGA
4 months ago by ATpoint 82k
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1
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874
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Answer: Answer: Inquiry Regarding Cutoff for Survival Analysis
4 months ago by ATpoint 82k
4
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1
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560
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Answer: Answer: My paired end data became single end data after mapping
4 months ago by ATpoint 82k
2
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469
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Answer: Answer: FastQC report
4 months ago by ATpoint 82k
5
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1
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1.3k
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Answer: Answer: Confusing results from FindConservedMarkers in Seurat
5 months ago by ATpoint 82k
2
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1
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696
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Answer: Answer: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
5 months ago by ATpoint 82k
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1
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859
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Answer: Answer: Multi-factor designs in DiffBind
5 months ago by ATpoint 82k
5
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1
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433
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Answer: Answer: Execute R command on specific termimal
5 months ago by ATpoint 82k
1
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1
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680
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Answer: Answer: How to use Nextflow to call scripts from different environments?
5 months ago by ATpoint 82k
2,325 results • Page 2 of 47
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