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Comment: C: Subset multiple columns in R or unix
5.0 years ago by daniele.avancini ▴ 70
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5.9k
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Comment: C: How to find differentially expressed genes between three groups?
5.1 years ago by daniele.avancini ▴ 70
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5.9k
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Answer: A: How to find differentially expressed genes between three groups?
5.1 years ago by daniele.avancini ▴ 70
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4
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Correlation matrix between enhancers and promoters (human)?
enhacer promoters correlation CAGE
5.2 years ago by daniele.avancini ▴ 70
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1.2k
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Answer: A: Correlation matrix between enhancers and promoters (human)?
5.2 years ago by daniele.avancini ▴ 70
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1.2k
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Comment: C: Correlation matrix between enhancers and promoters (human)?
5.2 years ago by daniele.avancini ▴ 70
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5.8k
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Diffbind for ATAC-seq data with no controls
Diffbind ATAC-seq
updated 15 months ago by ★ 2.0k • written 5.9 years ago by ▴ 70
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Comment: C: Mitochondrial contamination over 90% in published atac-seq dataset.
6.2 years ago by daniele.avancini ▴ 70
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Comment: C: Mitochondrial contamination over 90% in published atac-seq dataset.
6.4 years ago by daniele.avancini ▴ 70
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5.1k
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Comment: C: Mitochondrial contamination over 90% in published atac-seq dataset.
6.4 years ago by daniele.avancini ▴ 70
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5.1k
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Comment: C: Mitochondrial contamination over 90% in published atac-seq dataset.
6.4 years ago by daniele.avancini ▴ 70
4
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7
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5.1k
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Mitochondrial contamination over 90% in published atac-seq dataset.
atac-seq mtDNA bowtie2 mitochondrial contamination
6.4 years ago by daniele.avancini ▴ 70
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5.5k
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Comment: C: setting Coldata levels in Deseq2
6.5 years ago by daniele.avancini ▴ 70
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Comment: C: Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
6.5 years ago by daniele.avancini ▴ 70
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5.1k
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
ChIP-Seq R Diffbind edgeR DESeq2
6.5 years ago by daniele.avancini ▴ 70
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