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Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
1 day ago by colindaven 4.2k
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242
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Answer: Answer: mapping with vg giraffe
5 days ago by colindaven 4.2k
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320
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Answer: Answer: SNP calling without bcftools and vcftools
5 days ago by colindaven 4.2k
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273
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Answer: Answer: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
7 days ago by colindaven 4.2k
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211
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Answer: Answer: Snakemake, snake files
11 days ago by colindaven 4.2k
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206
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Answer: Answer: Integrating open source SRA data sets with my own RNA-seq - what is the proper e
12 days ago by colindaven 4.2k
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298
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Answer: Answer: Program to detect cis-regulatory modules for a non model species?
13 days ago by colindaven 4.2k
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541
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Answer: Answer: Failed to download pb-assembly in conda
14 days ago by colindaven 4.2k
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256
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Answer: Answer: Filtration to detect de novo SNVs in trio data
15 days ago by colindaven 4.2k
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419
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Comment: Comment: Detect contamination in bacterial WGS data
18 days ago by colindaven 4.2k
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419
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Answer: Answer: Detect contamination in bacterial WGS data
18 days ago by colindaven 4.2k
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6
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495
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Speeding up minimap2
alignment nanopore efficiency longread
19 days ago by colindaven 4.2k
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467
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Answer: Answer: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
21 days ago by colindaven 4.2k
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495
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Comment: Comment: Speeding up minimap2
19 days ago by colindaven 4.2k
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315
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Answer: Answer: L1 and L3 tags from shotgun metagenomic raw sequences
27 days ago by colindaven 4.2k
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296
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Answer: Answer: Sequencing old DNA samples
28 days ago by colindaven 4.2k
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453
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Answer: Answer: Variant calling for scaffold genome
4 weeks ago by colindaven 4.2k
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398
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Answer: Answer: Low basecalling of raw ONT data
4 weeks ago by colindaven 4.2k
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808
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Comment: Comment: Laptop specs for MiniON
5 weeks ago by colindaven 4.2k
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808
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Answer: Answer: Laptop specs for MiniON
5 weeks ago by colindaven 4.2k
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368
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Answer: Answer: Public availability of de-identified patient data
6 weeks ago by colindaven 4.2k
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263
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Comment: Comment: bcl2fastq error
6 weeks ago by colindaven 4.2k
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266
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Answer: Answer: Generating synthetic TB reads
6 weeks ago by colindaven 4.2k
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288
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Comment: Comment: A genome assembler which uses information on DNA methylation?
6 weeks ago by colindaven 4.2k
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288
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Answer: Answer: A genome assembler which uses information on DNA methylation?
7 weeks ago by colindaven 4.2k
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4.6k
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Answer: Answer: How to get percent identity from bam file ?
8 weeks ago by colindaven 4.2k
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296
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Answer: Answer: moving .txt from linux to Mac desktop
9 weeks ago by colindaven 4.2k
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675
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
9 weeks ago by colindaven 4.2k
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542
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Answer: Answer: Is there a way to calculate breadth of coverage from a VCF?
9 weeks ago by colindaven 4.2k
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675
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
9 weeks ago by colindaven 4.2k
1
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0
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405
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Answer: Answer: How do I input one fasta file for an entire reference genome?
12 weeks ago by colindaven 4.2k
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1
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392
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Comment: Comment: conda env in snakemake
12 weeks ago by colindaven 4.2k
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1
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392
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Answer: Answer: conda env in snakemake
12 weeks ago by colindaven 4.2k
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1
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904
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Comment: Comment: SNP Pipeline Help
12 weeks ago by colindaven 4.2k
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904
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Comment: Comment: SNP Pipeline Help
12 weeks ago by colindaven 4.2k
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390
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Answer: Answer: Comparing reference genome assemblies of two plant varieties
12 weeks ago by colindaven 4.2k
1
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1
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904
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Answer: Answer: SNP Pipeline Help
12 weeks ago by colindaven 4.2k
1
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0
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220
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Comment: Comment: bedtools
3 months ago by colindaven 4.2k
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0
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380
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
3 months ago by colindaven 4.2k
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1
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406
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Answer: Answer: Best way to detect CNV using WGS data
3 months ago by colindaven 4.2k
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539
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Answer: Answer: Nextflow runs Successfully but output files are empty. How to debug?
3 months ago by colindaven 4.2k
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475
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Answer: Answer: Are there any tools that automatically detect where to truncate forward and reve
3 months ago by colindaven 4.2k
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414
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Comment: Comment: perl can't see path problem
3 months ago by colindaven 4.2k
0
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0
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406
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Comment: Comment: Large intron or bad read polishing of tandemly duplicated genes?
3 months ago by colindaven 4.2k
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1
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406
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Comment: Comment: Large intron or bad read polishing of tandemly duplicated genes?
3 months ago by colindaven 4.2k
1
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1
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406
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Answer: Answer: Large intron or bad read polishing of tandemly duplicated genes?
3 months ago by colindaven 4.2k
0
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1
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514
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Answer: Answer: How to best utilize Supercomputer resources when running BWA on WGS data?
3 months ago by colindaven 4.2k
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2
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986
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Job: Bioinformatics intern in genome assembly and OMICS at KWS Saat SE, Einbeck, Germany. Remote possible.
job bioinformatics intern omics assembly
3 months ago by colindaven 4.2k
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0
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986
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Answer: Answer: Bioinformatics intern in genome assembly and OMICS at KWS Saat SE, Einbeck, Germ
3 months ago by colindaven 4.2k
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1
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375
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Comment: Comment: Illumina base space
3 months ago by colindaven 4.2k
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