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455
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Comment: Comment: Nextflow: No space left on device, process using output directory as input?
14 hours ago by colindaven 4.5k
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1
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372
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Answer: Answer: SRA Data Download
3 days ago by colindaven 4.5k
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0
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300
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Answer: Answer: Very high coverage Nanopore alignment Hg38
3 days ago by colindaven 4.5k
2
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237
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Comment: Comment: align reads to a custom reference genome
3 days ago by colindaven 4.5k
1
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0
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406
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Comment: Comment: How do you download from CyVerse using FTP or wget?
5 days ago by colindaven 4.5k
3
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1
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170
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Forum: Open problems in genomics 2023
genomics pangenomics
updated 11 days ago by 126k • written 11 days ago by 4.5k
2
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1
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398
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Answer: Answer: Nextflow workflow errors when run from Scratch dir?
11 days ago by colindaven 4.5k
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757
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Answer: Answer: Pangenome: Gene presence and absence analysis
12 days ago by colindaven 4.5k
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0
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995
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Comment: Comment: Converting gam to gaf
12 days ago by colindaven 4.5k
3
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1
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346
views
Speed up vg call ?
vg_team vg
updated 14 days ago by ▴ 320 • written 3 months ago by 4.5k
0
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1.5k
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Comment: Comment: passing a third-party GFA to vg tools
14 days ago by colindaven 4.5k
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1.1k
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Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
17 days ago by colindaven 4.5k
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0
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410
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Answer: Answer: High-resolution annotation of LTR elements
18 days ago by colindaven 4.5k
0
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1
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1.1k
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Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
18 days ago by colindaven 4.5k
1
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1
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780
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Comment: Comment: Nextflow Singularity/Apptainer error: command not found
19 days ago by colindaven 4.5k
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1
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1.1k
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Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
20 days ago by colindaven 4.5k
0
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2
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1.1k
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Comment: Comment: vg call - Excessively high memory usage for some chromosomes
23 days ago by colindaven 4.5k
0
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1
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259
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Answer: Answer: low featurecounts assignment rate despite of good mapping with STAR
24 days ago by colindaven 4.5k
0
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0
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476
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Answer: Answer: Using LiftOver to change genomic build
24 days ago by colindaven 4.5k
0
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1
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523
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Answer: Answer: making a BIGWIG from BAM file
24 days ago by colindaven 4.5k
0
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1
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449
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Answer: Answer: MissAssembly Correction
26 days ago by colindaven 4.5k
0
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1
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282
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Answer: Answer: Bowtie2 which reference is best ?
27 days ago by colindaven 4.5k
0
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0
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406
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Answer: Answer: How to convert a .gbk or .faa to .pep as well a .gbk or .gff to .bed?
4 weeks ago by colindaven 4.5k
1
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1
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466
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Answer: Answer: How to install `BETA` on linux server?
4 weeks ago by colindaven 4.5k
1
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0
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490
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Comment: Comment: Bioinformatics - how to start?
4 weeks ago by colindaven 4.5k
1
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2
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240
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Answer: Answer: Linux server Vs Linux pc
4 weeks ago by colindaven 4.5k
0
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1
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340
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Comment: Comment: What to do if hundreds or genes have no functional domain!
5 weeks ago by colindaven 4.5k
0
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1
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340
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Answer: Answer: What to do if hundreds or genes have no functional domain!
5 weeks ago by colindaven 4.5k
1
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0
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277
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Answer: Answer: carp reads in my bacterial small RNome
5 weeks ago by colindaven 4.5k
0
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1
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268
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Comment: Comment: How I know the genome assembly quality by the low coverage Pacbio data ?
5 weeks ago by colindaven 4.5k
1
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0
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322
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Answer: Answer: Variant calling on synthesized DNA
5 weeks ago by colindaven 4.5k
0
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1
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452
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Answer: Answer: Error: ##fileformat=VCFv4.2 does not exist
5 weeks ago by colindaven 4.5k
0
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0
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348
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Answer: Answer: How to calculate Minion run time needed?
7 weeks ago by colindaven 4.5k
0
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1
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378
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Answer: Answer: Error: Please supply a reference FASTA/GBK/EMBL file with --reference
7 weeks ago by colindaven 4.5k
0
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0
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810
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Answer: Answer: bedGraph to bigwig
7 weeks ago by colindaven 4.5k
0
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0
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303
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Comment: Comment: short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
7 weeks ago by colindaven 4.5k
0
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0
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427
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Comment: Comment: How to compare a Nanopore read (.fastq) to a genome assembly file (.fna)
7 weeks ago by colindaven 4.5k
0
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0
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371
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Comment: Comment: Problem with NextDenovo fungal assembly
7 weeks ago by colindaven 4.5k
0
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0
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974
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Comment: Comment: rBCS & pyBCS: open-source packages to support interactive visualizations of sing
7 weeks ago by colindaven 4.5k
1
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1
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371
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Answer: Answer: Problem Facing in NextDenovo assembly
7 weeks ago by colindaven 4.5k
0
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0
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417
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Answer: Answer: get SNPs from draft genomes
7 weeks ago by colindaven 4.5k
2
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0
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180
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Answer: Answer: genes presence-absence analysis
7 weeks ago by colindaven 4.5k
0
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0
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1.1k
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Comment: Comment: Tools / Packages to assess allele specific methylation?
10 weeks ago by colindaven 4.5k
1
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0
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434
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Answer: Answer: Anyone can suggest tools for detection isoform in long-read sequencing
10 weeks ago by colindaven 4.5k
3
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1
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1.1k
views
Answer: Answer: samtools sort operation very slow, bottle-neck is external hard drive?
10 weeks ago by colindaven 4.5k
0
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0
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872
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Comment: Comment: FastQC quality
10 weeks ago by colindaven 4.5k
0
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1
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872
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Answer: Answer: FastQC quality
10 weeks ago by colindaven 4.5k
0
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2
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872
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Comment: Comment: FastQC quality
10 weeks ago by colindaven 4.5k
0
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1
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1.1k
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Comment: Comment: Tools / Packages to assess allele specific methylation?
10 weeks ago by colindaven 4.5k
1
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1
reply
1.1k
views
Answer: Answer: Tools / Packages to assess allele specific methylation?
10 weeks ago by colindaven 4.5k
729 results • Page 1 of 15
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