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1
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455
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Comment:
Comment: Nextflow: No space left on device, process using output directory as input?
14 hours ago by
colindaven
4.5k
0
votes
1
reply
372
views
Answer:
Answer: SRA Data Download
3 days ago by
colindaven
4.5k
0
votes
0
replies
300
views
Answer:
Answer: Very high coverage Nanopore alignment Hg38
3 days ago by
colindaven
4.5k
2
votes
0
replies
237
views
Comment:
Comment: align reads to a custom reference genome
3 days ago by
colindaven
4.5k
1
vote
0
replies
406
views
Comment:
Comment: How do you download from CyVerse using FTP or wget?
5 days ago by
colindaven
4.5k
3
votes
1
reply
170
views
Forum:
Open problems in genomics 2023
genomics
pangenomics
updated 11 days ago by
GenoMax
126k • written 11 days ago by
colindaven
4.5k
2
votes
1
reply
398
views
Answer:
Answer: Nextflow workflow errors when run from Scratch dir?
11 days ago by
colindaven
4.5k
0
votes
0
replies
757
views
Answer:
Answer: Pangenome: Gene presence and absence analysis
12 days ago by
colindaven
4.5k
0
votes
0
replies
995
views
Comment:
Comment: Converting gam to gaf
12 days ago by
colindaven
4.5k
3
votes
1
reply
346
views
Speed up vg call ?
vg_team
vg
updated 14 days ago by
glenn.hickey
▴ 320 • written 3 months ago by
colindaven
4.5k
0
votes
0
replies
1.5k
views
Comment:
Comment: passing a third-party GFA to vg tools
14 days ago by
colindaven
4.5k
0
votes
0
replies
1.1k
views
Comment:
Comment: vg augment/call - Excessively high memory usage for some chromosomes
17 days ago by
colindaven
4.5k
0
votes
0
replies
410
views
Answer:
Answer: High-resolution annotation of LTR elements
18 days ago by
colindaven
4.5k
0
votes
1
reply
1.1k
views
Comment:
Comment: vg augment/call - Excessively high memory usage for some chromosomes
18 days ago by
colindaven
4.5k
1
vote
1
reply
780
views
Comment:
Comment: Nextflow Singularity/Apptainer error: command not found
19 days ago by
colindaven
4.5k
0
votes
1
reply
1.1k
views
Comment:
Comment: vg augment/call - Excessively high memory usage for some chromosomes
20 days ago by
colindaven
4.5k
0
votes
2
replies
1.1k
views
Comment:
Comment: vg call - Excessively high memory usage for some chromosomes
23 days ago by
colindaven
4.5k
0
votes
1
reply
259
views
Answer:
Answer: low featurecounts assignment rate despite of good mapping with STAR
24 days ago by
colindaven
4.5k
0
votes
0
replies
476
views
Answer:
Answer: Using LiftOver to change genomic build
24 days ago by
colindaven
4.5k
0
votes
1
reply
523
views
Answer:
Answer: making a BIGWIG from BAM file
24 days ago by
colindaven
4.5k
0
votes
1
reply
449
views
Answer:
Answer: MissAssembly Correction
26 days ago by
colindaven
4.5k
0
votes
1
reply
282
views
Answer:
Answer: Bowtie2 which reference is best ?
27 days ago by
colindaven
4.5k
0
votes
0
replies
406
views
Answer:
Answer: How to convert a .gbk or .faa to .pep as well a .gbk or .gff to .bed?
4 weeks ago by
colindaven
4.5k
1
vote
1
reply
466
views
Answer:
Answer: How to install `BETA` on linux server?
4 weeks ago by
colindaven
4.5k
1
vote
0
replies
490
views
Comment:
Comment: Bioinformatics - how to start?
4 weeks ago by
colindaven
4.5k
1
vote
2
replies
240
views
Answer:
Answer: Linux server Vs Linux pc
4 weeks ago by
colindaven
4.5k
0
votes
1
reply
340
views
Comment:
Comment: What to do if hundreds or genes have no functional domain!
5 weeks ago by
colindaven
4.5k
0
votes
1
reply
340
views
Answer:
Answer: What to do if hundreds or genes have no functional domain!
5 weeks ago by
colindaven
4.5k
1
vote
0
replies
277
views
Answer:
Answer: carp reads in my bacterial small RNome
5 weeks ago by
colindaven
4.5k
0
votes
1
reply
268
views
Comment:
Comment: How I know the genome assembly quality by the low coverage Pacbio data ?
5 weeks ago by
colindaven
4.5k
1
vote
0
replies
322
views
Answer:
Answer: Variant calling on synthesized DNA
5 weeks ago by
colindaven
4.5k
0
votes
1
reply
452
views
Answer:
Answer: Error: ##fileformat=VCFv4.2 does not exist
5 weeks ago by
colindaven
4.5k
0
votes
0
replies
348
views
Answer:
Answer: How to calculate Minion run time needed?
7 weeks ago by
colindaven
4.5k
0
votes
1
reply
378
views
Answer:
Answer: Error: Please supply a reference FASTA/GBK/EMBL file with --reference
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
810
views
Answer:
Answer: bedGraph to bigwig
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
303
views
Comment:
Comment: short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
427
views
Comment:
Comment: How to compare a Nanopore read (.fastq) to a genome assembly file (.fna)
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
371
views
Comment:
Comment: Problem with NextDenovo fungal assembly
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
974
views
Comment:
Comment: rBCS & pyBCS: open-source packages to support interactive visualizations of sing
7 weeks ago by
colindaven
4.5k
1
vote
1
reply
371
views
Answer:
Answer: Problem Facing in NextDenovo assembly
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
417
views
Answer:
Answer: get SNPs from draft genomes
7 weeks ago by
colindaven
4.5k
2
votes
0
replies
180
views
Answer:
Answer: genes presence-absence analysis
7 weeks ago by
colindaven
4.5k
0
votes
0
replies
1.1k
views
Comment:
Comment: Tools / Packages to assess allele specific methylation?
10 weeks ago by
colindaven
4.5k
1
vote
0
replies
434
views
Answer:
Answer: Anyone can suggest tools for detection isoform in long-read sequencing
10 weeks ago by
colindaven
4.5k
3
votes
1
reply
1.1k
views
Answer:
Answer: samtools sort operation very slow, bottle-neck is external hard drive?
10 weeks ago by
colindaven
4.5k
0
votes
0
replies
872
views
Comment:
Comment: FastQC quality
10 weeks ago by
colindaven
4.5k
0
votes
1
reply
872
views
Answer:
Answer: FastQC quality
10 weeks ago by
colindaven
4.5k
0
votes
2
replies
872
views
Comment:
Comment: FastQC quality
10 weeks ago by
colindaven
4.5k
0
votes
1
reply
1.1k
views
Comment:
Comment: Tools / Packages to assess allele specific methylation?
10 weeks ago by
colindaven
4.5k
1
vote
1
reply
1.1k
views
Answer:
Answer: Tools / Packages to assess allele specific methylation?
10 weeks ago by
colindaven
4.5k
729 results • Page
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