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Comment: Comment: Processing Fast5 files from ONT
2.9 years ago by colindaven 8.1k
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Comment: Comment: Processing Fast5 files from ONT
2.9 years ago by colindaven 8.1k
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Answer: Answer: A Computer Scientist who wants to start Bioinformatics
2.9 years ago by colindaven 8.1k
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5.9k
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Comment: Comment: Processing Fast5 files from ONT
2.9 years ago by colindaven 8.1k
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1.7k
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Comment: Comment: BBDuk problem: maskMiddle was disabled because useShortKmers=true
2.9 years ago by colindaven 8.1k
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804
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Answer: Answer: How to transform genomic coordinates into mature mRNA positions?
2.9 years ago by colindaven 8.1k
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Answer: Answer: Check if nanopores reads is from the same species as the one used in an assembly
2.9 years ago by colindaven 8.1k
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Comment: Comment: How to plot SNP distribution or coverage using vcf files?
2.9 years ago by colindaven 8.1k
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3.2k
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Answer: Answer: Different results in finding human sequences from metagenomes (bowtie2 and Krake
2.9 years ago by colindaven 8.1k
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684
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Answer: Answer: unique kmers
2.9 years ago by colindaven 8.1k
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2.8k
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Answer: Answer: minimap2, before or after assembly?
3.0 years ago by colindaven 8.1k
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2.8k
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Comment: Comment: minimap2, before or after assembly?
3.0 years ago by colindaven 8.1k
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2.0k
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Answer: Answer: Mapping all 32-mers within Hamming Distance = 3
3.0 years ago by colindaven 8.1k
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850
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Answer: Answer: Guided exercises to practice ATAC-seq/ChIP-seq analysis?
3.0 years ago by colindaven 8.1k
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1.4k
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Comment: Comment: Nanopore sequencing bacteria and problems with NCBI PGAP annotation
3.0 years ago by colindaven 8.1k
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1.4k
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Comment: Comment: Nanopore sequencing bacteria and problems with NCBI PGAP annotation
3.0 years ago by colindaven 8.1k
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3.6k
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Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
3.0 years ago by colindaven 8.1k
0
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1.4k
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Answer: Answer: mapping with vg giraffe
3.0 years ago by colindaven 8.1k
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1.8k
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Answer: Answer: SNP calling without bcftools and vcftools
3.0 years ago by colindaven 8.1k
1
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2
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2.4k
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Answer: Answer: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
3.0 years ago by colindaven 8.1k
3
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1.3k
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Answer: Answer: Snakemake, snake files
3.0 years ago by colindaven 8.1k
1
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1
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818
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Answer: Answer: Integrating open source SRA data sets with my own RNA-seq - what is the proper e
3.0 years ago by colindaven 8.1k
1
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1
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1.3k
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Answer: Answer: Program to detect cis-regulatory modules for a non model species?
3.0 years ago by colindaven 8.1k
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1
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3.7k
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Answer: Answer: Failed to download pb-assembly in conda
3.0 years ago by colindaven 8.1k
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1
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1.3k
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Answer: Answer: Filtration to detect de novo SNVs in trio data
3.0 years ago by colindaven 8.1k
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1.9k
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Comment: Comment: Detect contamination in bacterial WGS data
3.0 years ago by colindaven 8.1k
2
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1
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1.9k
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Answer: Answer: Detect contamination in bacterial WGS data
3.0 years ago by colindaven 8.1k
5
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6
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5.2k
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Speeding up minimap2
alignment nanopore efficiency longread
3.0 years ago by colindaven 8.1k
1
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1
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2.4k
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Answer: Answer: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
3.0 years ago by colindaven 8.1k
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5.2k
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Comment: Comment: Speeding up minimap2
3.0 years ago by colindaven 8.1k
1
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1
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1.4k
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Answer: Answer: L1 and L3 tags from shotgun metagenomic raw sequences
3.0 years ago by colindaven 8.1k
2
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1
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1.0k
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Answer: Answer: Sequencing old DNA samples
3.0 years ago by colindaven 8.1k
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0
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1.6k
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Answer: Answer: Variant calling for scaffold genome
3.1 years ago by colindaven 8.1k
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1
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2.3k
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Answer: Answer: Low basecalling of raw ONT data
3.1 years ago by colindaven 8.1k
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0
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4.3k
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Comment: Comment: Laptop specs for MiniON
3.1 years ago by colindaven 8.1k
3
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1
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4.3k
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Answer: Answer: Laptop specs for MiniON
3.1 years ago by colindaven 8.1k
2
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1
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2.1k
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Answer: Answer: Public availability of de-identified patient data
3.1 years ago by colindaven 8.1k
0
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0
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1.8k
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Comment: Comment: bcl2fastq error
3.1 years ago by colindaven 8.1k
2
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0
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1.5k
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Answer: Answer: Generating synthetic TB reads
3.1 years ago by colindaven 8.1k
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0
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1.2k
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Comment: Comment: A genome assembler which uses information on DNA methylation?
3.1 years ago by colindaven 8.1k
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0
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1.2k
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Answer: Answer: A genome assembler which uses information on DNA methylation?
3.1 years ago by colindaven 8.1k
1
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0
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7.8k
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Answer: Answer: How to get percent identity from bam file ?
3.1 years ago by colindaven 8.1k
2
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1
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1.1k
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Answer: Answer: moving .txt from linux to Mac desktop
3.1 years ago by colindaven 8.1k
0
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1
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2.8k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.1 years ago by colindaven 8.1k
0
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1
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3.4k
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Answer: Answer: Is there a way to calculate breadth of coverage from a VCF?
3.1 years ago by colindaven 8.1k
0
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1
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2.8k
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Comment: Comment: How to pair TCGA bam files with no properly paired reads?
3.1 years ago by colindaven 8.1k
1
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0
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1.6k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
3.2 years ago by colindaven 8.1k
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1
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3.3k
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Comment: Comment: conda env in snakemake
3.2 years ago by colindaven 8.1k
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1
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3.3k
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Answer: Answer: conda env in snakemake
3.2 years ago by colindaven 8.1k
1
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1
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3.3k
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Comment: Comment: SNP Pipeline Help
3.2 years ago by colindaven 8.1k
1,118 results • Page 10 of 23
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