Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
591
views
Comment: Comment: Mitochondrial Variant Calling Tools
6 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
500
views
Comment: Comment: samtools mpileup and samtools tview give different reads quality results
6 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
8.3k
views
Comment: Comment: picard installation failure
6 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
974
views
Comment: Comment: Variant Missing in VCF but Present in BAM Files: Discrepancy Identified via IGV
6 months ago by Pierre Lindenbaum 166k
2
votes
1
reply
759
views
Comment: Comment: Manta analysis in WES
6 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
861
views
Comment: Comment: Samtools view only showing read2 for PE mapped reads
6 months ago by Pierre Lindenbaum 166k
2
votes
0
replies
861
views
Answer: Answer: Samtools view only showing read2 for PE mapped reads
6 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
1.5k
views
Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
6 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
537
views
Comment: Comment: converting transcript positions to genomic locations
6 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
718
views
Answer: Answer: filtering heterozygous genotypes
6 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
689
views
Answer: Answer: How to convert CIGAR string to VCF?
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
434
views
Comment: Comment: SNP density visualization with circos in galaxy
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
578
views
Comment: Comment: Tool to phase genotyped large SV from short-read data?
7 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
888
views
Comment: Comment: Metagenomic binnig step
7 months ago by Pierre Lindenbaum 166k
2
votes
0
replies
755
views
Answer: Answer: Extracting Sequences from a FASTA File Using Exon Coordinates from a GTF File
7 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
737
views
Answer: Answer: mapDamage error
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
737
views
Comment: Comment: mapDamage error
7 months ago by Pierre Lindenbaum 166k
2
votes
0
replies
586
views
Answer: Answer: Annotate WGS VCF with Allele Frequencies
7 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
871
views
Comment: Comment: merging .fastq.gz files results in corrupted files
7 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
968
views
Answer: Answer: High memory sorting of kmers - best way to use sort
7 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
871
views
Comment: Comment: merging .fastq.gz files results in corrupted files
7 months ago by Pierre Lindenbaum 166k
4
votes
1
reply
704
views
Answer: Answer: Bcftools extracting list of markers by chr and pos
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
504
views
Comment: Comment: Issue with picard index in my one chr reference fasta file
7 months ago by Pierre Lindenbaum 166k
3
votes
0
replies
538
views
Answer: Answer: Filter SAM file for read pairs that align on same strand
7 months ago by Pierre Lindenbaum 166k
3
votes
0
replies
498
views
Comment: Comment: Missing variants in chrMT Phase3
7 months ago by Pierre Lindenbaum 166k
2
votes
0
replies
827
views
Answer: Answer: HaplotypeCaller Not Detecting Variants
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
524
views
Answer: Answer: Picard AddOrReplaceReadGroups,
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
799
views
Comment: Comment: Filter duplicates with picard
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
799
views
Comment: Comment: Filter duplicates with picard
7 months ago by Pierre Lindenbaum 166k
2
votes
1
reply
799
views
Answer: Answer: Filter duplicates with picard
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
799
views
Comment: Comment: Filter duplicates with picard
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
573
views
Answer: Answer: Mitochondrial Genome Variant Calling and Annotation Tools
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
513
views
Comment: Comment: Ginkgo tool for CNV
updated 7 months ago by 45k • written 7 months ago by 166k
0
votes
0
replies
1.0k
views
Comment: Comment: bcftools not calling variants that appear high quality
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
1.0k
views
Comment: Comment: bcftools not calling variants that appear high quality
7 months ago by Pierre Lindenbaum 166k
1
vote
1
reply
1.3k
views
Answer: Answer: Snakemake config errors
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
496
views
Answer: Answer: Find the highest rs accession number in the latest dbSNP build?
7 months ago by Pierre Lindenbaum 166k
2
votes
1
reply
777
views
Answer: Answer: Retrieve the structure information from mirbase
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
414
views
Comment: Comment: create karyotype file
7 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
1.0k
views
Answer: Answer: bcftools not calling variants that appear high quality
7 months ago by Pierre Lindenbaum 166k
3
votes
1
reply
1.0k
views
Answer: Answer: Using COUNT with bcftools filter
7 months ago by Pierre Lindenbaum 166k
4
votes
1
reply
740
views
Answer: Answer: identifying 3'utrs for multiple transcripts of genes from a summarized experimen
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
1.2k
views
Answer: Answer: Analyze read lengths in Illumina data
7 months ago by Pierre Lindenbaum 166k
3
votes
0
replies
992
views
Answer: Answer: Convert Long Nanopore reads to Illumina Paired end reads
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
470
views
Comment: Comment: multiple outputfiles after bamtofastq for same library
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
2.1k
views
Comment: Comment: Boltz1 structure prediction software installation
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
449
views
Answer: Answer: Merge genotypes of two vcf files
7 months ago by Pierre Lindenbaum 166k
0
votes
0
replies
624
views
Comment: Comment: Protein adnotation, gene adnnotation, hordeum vulgare RNA-Seq
7 months ago by Pierre Lindenbaum 166k
1
vote
0
replies
548
views
Answer: Answer: How to calculate MAF from vcf files ? (SNPVersity from maizeGDB)
7 months ago by Pierre Lindenbaum 166k
0
votes
1
reply
588
views
Comment: Comment: FilterMutectCalls producing empty vcf file
7 months ago by Pierre Lindenbaum 166k
12,988 results • Page 3 of 260
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6