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Comment: Comment: sorted bam file generated from gff transcript fastas, how to get counts with HTs
updated 6 weeks ago by 43k • written 6 weeks ago by 161k
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1
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379
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Comment: Comment: samtools filtering
6 weeks ago by Pierre Lindenbaum 161k
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1
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602
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Comment: Comment: frequency of each variant per sample
6 weeks ago by Pierre Lindenbaum 161k
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379
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Comment: Comment: samtools filtering
6 weeks ago by Pierre Lindenbaum 161k
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403
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Answer: Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 6 weeks ago by 6.4k • written 6 weeks ago by 161k
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230
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Comment: Comment: utr sequence retrieval from UCSC
6 weeks ago by Pierre Lindenbaum 161k
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290
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Answer: Answer: Multiple iterations of sorted bam output files with picard SortSam
6 weeks ago by Pierre Lindenbaum 161k
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256
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Answer: Answer: Using nextflow for performing quality control and trimming of reads
6 weeks ago by Pierre Lindenbaum 161k
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332
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
6 weeks ago by Pierre Lindenbaum 161k
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378
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Comment: Comment: how to do the repeatability filtering of vcf files?
6 weeks ago by Pierre Lindenbaum 161k
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378
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Comment: Comment: how to do the repeatability filtering of vcf files?
6 weeks ago by Pierre Lindenbaum 161k
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341
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Comment: Comment: Adding Clinvar data source to funcotator
6 weeks ago by Pierre Lindenbaum 161k
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312
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Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
6 weeks ago by Pierre Lindenbaum 161k
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312
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Comment: Comment: BioGRID REST - How to retrieve all the protein interactions?
6 weeks ago by Pierre Lindenbaum 161k
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1
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361
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Comment: Comment: vcf file: number of samples does not match number of columns
6 weeks ago by Pierre Lindenbaum 161k
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1
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1.1k
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Comment: Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
6 weeks ago by Pierre Lindenbaum 161k
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1.1k
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Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
7 weeks ago by Pierre Lindenbaum 161k
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407
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Comment: Comment: calculate mismatch rate from VCF file
7 weeks ago by Pierre Lindenbaum 161k
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373
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diffbind : killed dba.count(DBsample, bParallel=FALSE)
diffbind r atacseq
7 weeks ago by Pierre Lindenbaum 161k
1
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373
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Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
7 weeks ago by Pierre Lindenbaum 161k
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1
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407
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Comment: Comment: calculate mismatch rate from VCF file
7 weeks ago by Pierre Lindenbaum 161k
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1
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731
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Comment: Comment: Variant calling of GBS data
7 weeks ago by Pierre Lindenbaum 161k
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1
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731
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Comment: Comment: Variant calling of GBS data
7 weeks ago by Pierre Lindenbaum 161k
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1
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407
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Answer: Answer: calculate mismatch rate from VCF file
7 weeks ago by Pierre Lindenbaum 161k
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1
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693
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Comment: Comment: Piping samtools to R
7 weeks ago by Pierre Lindenbaum 161k
2
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2
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693
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Comment: Comment: Piping samtools to R
7 weeks ago by Pierre Lindenbaum 161k
1
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1
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287
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Comment: Comment: A pipeline for prediction and annotation of obelisks
7 weeks ago by Pierre Lindenbaum 161k
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188
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Comment: Comment: dbsnp flanks information
7 weeks ago by Pierre Lindenbaum 161k
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1
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731
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Comment: Comment: Variant calling of GBS data
7 weeks ago by Pierre Lindenbaum 161k
1
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0
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298
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Comment: Comment: Extracting information from my VCF file
7 weeks ago by Pierre Lindenbaum 161k
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180
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Comment: Comment: Karytotype color annotations
7 weeks ago by Pierre Lindenbaum 161k
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0
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322
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Comment: Comment: Confirm if a genome position falls into a coding exon
7 weeks ago by Pierre Lindenbaum 161k
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1
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322
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Answer: Answer: Confirm if a genome position falls into a coding exon
7 weeks ago by Pierre Lindenbaum 161k
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0
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427
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Comment: Comment: 0-based coordinates from samtools depth
7 weeks ago by Pierre Lindenbaum 161k
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1
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427
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Comment: Comment: 0-based coordinates from samtools depth
7 weeks ago by Pierre Lindenbaum 161k
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0
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427
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Comment: Comment: 0-based coordinates from samtools depth
7 weeks ago by Pierre Lindenbaum 161k
1
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1
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427
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Answer: Answer: 0-based coordinates from samtools depth
7 weeks ago by Pierre Lindenbaum 161k
3
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2
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731
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Answer: Answer: Variant calling of GBS data
7 weeks ago by Pierre Lindenbaum 161k
1
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0
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281
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Comment: Comment: Reference mouse phased vcf
7 weeks ago by Pierre Lindenbaum 161k
3
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0
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732
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Comment: Comment: How to filter Illumina Nirvana variant annotation?
7 weeks ago by Pierre Lindenbaum 161k
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1
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732
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Comment: Comment: How to filter Illumina Nirvana variant annotation?
7 weeks ago by Pierre Lindenbaum 161k
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0
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732
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Answer: Answer: How to filter Illumina Nirvana variant annotation?
7 weeks ago by Pierre Lindenbaum 161k
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412
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Comment: Comment: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
7 weeks ago by Pierre Lindenbaum 161k
1
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0
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412
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Answer: Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
7 weeks ago by Pierre Lindenbaum 161k
0
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0
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572
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Comment: Comment: Need help understanding core SNPs
7 weeks ago by Pierre Lindenbaum 161k
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1
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572
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Comment: Comment: Need help understanding core SNPs
7 weeks ago by Pierre Lindenbaum 161k
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0
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462
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Comment: Comment: Losing my mind with a VCF problem
7 weeks ago by Pierre Lindenbaum 161k
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0
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721
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Comment: Comment: Nextflow ERROR : Timeout waiting for connection from pool
7 weeks ago by Pierre Lindenbaum 161k
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1
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721
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Comment: Comment: Nextflow ERROR : Timeout waiting for connection from pool
7 weeks ago by Pierre Lindenbaum 161k
0
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1
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556
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Comment: Comment: I have a bed file containing genomic locations and A or B compartment annotation
7 weeks ago by Pierre Lindenbaum 161k
12,469 results • Page 4 of 250
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