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Comment: Comment: Snakemake config errors
9 months ago by dsull ★ 7.8k
2
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1.0k
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Comment: Comment: How to handle paired and unpaired reads in RNAseq pipeline
9 months ago by dsull ★ 7.8k
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1
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1.5k
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Comment: Comment: Snakemake config errors
9 months ago by dsull ★ 7.8k
2
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1
reply
1.0k
views
Answer: Answer: How to handle paired and unpaired reads in RNAseq pipeline
9 months ago by dsull ★ 7.8k
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0
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2.2k
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Comment: Comment: Preparation needed to get into Bioinformatic field
9 months ago by dsull ★ 7.8k
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1
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2.2k
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Answer: Answer: Preparation needed to get into Bioinformatic field
9 months ago by dsull ★ 7.8k
3
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2
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1.6k
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Answer: Answer: How well was the rRNA depletion for RNA-Seq experiments
9 months ago by dsull ★ 7.8k
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1.2k
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Comment: Comment: How to do allele specific expression analysis (ASE)
9 months ago by dsull ★ 7.8k
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2
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1.2k
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Answer: Answer: How to do allele specific expression analysis (ASE)
9 months ago by dsull ★ 7.8k
2
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0
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5.1k
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Comment: Comment: STAR aligner - Is this still maintained?
9 months ago by dsull ★ 7.8k
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0
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1.8k
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
9 months ago by dsull ★ 7.8k
3
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1
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1.8k
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
9 months ago by dsull ★ 7.8k
1
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2
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1.8k
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
9 months ago by dsull ★ 7.8k
3
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0
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2.1k
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Answer: Answer: Premade RNA-seq pipeline or custom
10 months ago by dsull ★ 7.8k
0
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0
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1.4k
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Comment: Comment: Sample-level demultiplex raw FASTQ file
10 months ago by dsull ★ 7.8k
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0
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7.5k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
10 months ago by dsull ★ 7.8k
0
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0
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7.5k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
10 months ago by dsull ★ 7.8k
0
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1
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7.5k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
10 months ago by dsull ★ 7.8k
1
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0
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7.5k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
10 months ago by dsull ★ 7.8k
1
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0
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889
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Answer: Answer: rRNA contamination in RNASeq fdata
10 months ago by dsull ★ 7.8k
2
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0
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876
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Answer: Answer: STARsolo sorted bam contains 'non-whitelisted' barcodes
10 months ago by dsull ★ 7.8k
1
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0
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600
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Answer: Answer: No change in quality score graph even after adapter removal
10 months ago by dsull ★ 7.8k
0
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0
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1.9k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
10 months ago by dsull ★ 7.8k
0
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1
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1.9k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
10 months ago by dsull ★ 7.8k
1
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1
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2.3k
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
10 months ago by dsull ★ 7.8k
0
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0
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970
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Answer: Answer: Spatial correlation between two continuous variables
11 months ago by dsull ★ 7.8k
0
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1
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2.3k
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
11 months ago by dsull ★ 7.8k
0
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0
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2.1k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
11 months ago by dsull ★ 7.8k
0
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1
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2.1k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
11 months ago by dsull ★ 7.8k
3
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1
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2.3k
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Answer: Answer: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
5 months ago by dsull ★ 7.8k
0
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0
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1.2k
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Answer: Answer: PossionDis method for identification of differentially expressed genes.
11 months ago by dsull ★ 7.8k
1
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0
replies
1.8k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
11 months ago by dsull ★ 7.8k
0
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1
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1.8k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
11 months ago by dsull ★ 7.8k
0
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1
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1.8k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
11 months ago by dsull ★ 7.8k
0
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0
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934
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Comment: Comment: How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
11 months ago by dsull ★ 7.8k
1
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0
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1.1k
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Comment: Comment: Pre-pseudoalignment preprocessing
11 months ago by dsull ★ 7.8k
1
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1
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1.1k
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Comment: Comment: alignment to human transcriptome with Bowtie2
12 months ago by dsull ★ 7.8k
0
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0
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2.3k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
12 months ago by dsull ★ 7.8k
1
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0
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1.7k
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by dsull ★ 7.8k
0
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1
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2.5k
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Comment: Comment: How to determine whether it is 10x data
12 months ago by dsull ★ 7.8k
3
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2
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1.7k
views
Answer: Answer: How to handle RNA seq data with unbalanced % rRNA by group?
12 months ago by dsull ★ 7.8k
0
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0
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1.1k
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Comment: Comment: How to count the number and proportion of different barcode combinations in DNA
updated 13 months ago by 45k • written 13 months ago by ★ 7.8k
1
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0
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871
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Comment: Comment: Help With Sleuth
13 months ago by dsull ★ 7.8k
0
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0
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1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by dsull ★ 7.8k
2
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0
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803
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Answer: Answer: How far pangenome from being the mainstream?
13 months ago by dsull ★ 7.8k
0
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1
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1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by dsull ★ 7.8k
0
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1
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1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by dsull ★ 7.8k
1
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1
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1.2k
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Comment: Comment: Problem while using Tophat 2.1.0 to search gene fusions
13 months ago by dsull ★ 7.8k
1
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1
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2.0k
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Answer: Answer: Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
13 months ago by dsull ★ 7.8k
0
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0
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1.9k
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
13 months ago by dsull ★ 7.8k
804 results • Page 2 of 17
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