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2
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6.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
18 months ago by dsull ★ 7.8k
0
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0
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2.2k
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Comment: Comment: Heatmap and rna-seq
18 months ago by dsull ★ 7.8k
1
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1
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2.2k
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Answer: Answer: Heatmap and rna-seq
18 months ago by dsull ★ 7.8k
2
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1
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1.5k
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
18 months ago by dsull ★ 7.8k
0
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0
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1.9k
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Comment: Comment: To get p-values for the TPM
18 months ago by dsull ★ 7.8k
1
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1
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1.9k
views
Comment: Comment: To get p-values for the TPM
18 months ago by dsull ★ 7.8k
1
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2
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1.9k
views
Answer: Answer: To get p-values for the TPM
18 months ago by dsull ★ 7.8k
0
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1
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3.6k
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
18 months ago by dsull ★ 7.8k
3
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1
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3.6k
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
18 months ago by dsull ★ 7.8k
1
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0
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1.4k
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Answer: Answer: How to establish haplotype-specific gene expression levels
18 months ago by dsull ★ 7.8k
1
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0
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1.3k
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Comment: Comment: from row count to tpm
18 months ago by dsull ★ 7.8k
1
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0
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581
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
18 months ago by dsull ★ 7.8k
1
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1
reply
2.4k
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
19 months ago by dsull ★ 7.8k
2
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1
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2.4k
views
Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
19 months ago by dsull ★ 7.8k
0
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1
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1.4k
views
Comment: Comment: How to to establish haplotype-specific gene expression levels
19 months ago by dsull ★ 7.8k
1
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0
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1.2k
views
Comment: Comment: rRNA depletion of RIP-seq samples
19 months ago by dsull ★ 7.8k
1
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1
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768
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
19 months ago by dsull ★ 7.8k
1
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0
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849
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
19 months ago by dsull ★ 7.8k
0
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0
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5.1k
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Comment: Comment: Installing Cell Ranger
19 months ago by dsull ★ 7.8k
0
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0
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1.9k
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Comment: Comment: DESeq2 and normalization
19 months ago by dsull ★ 7.8k
0
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0
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2.3k
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Comment: Comment: STAR aligner options
19 months ago by dsull ★ 7.8k
1
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0
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2.4k
views
Comment: Comment: Only one read per run - Trying to use CellRangerv7
19 months ago by dsull ★ 7.8k
0
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1
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2.3k
views
Comment: Comment: STAR aligner options
19 months ago by dsull ★ 7.8k
1
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1
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1.9k
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Answer: Answer: DESeq2 and normalization
19 months ago by dsull ★ 7.8k
0
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1
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17k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
19 months ago by dsull ★ 7.8k
0
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1
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17k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
19 months ago by dsull ★ 7.8k
1
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1
reply
3.4k
views
Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
19 months ago by dsull ★ 7.8k
1
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1
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3.4k
views
Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
19 months ago by dsull ★ 7.8k
0
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0
replies
773
views
Comment: Comment: DEG (Differential expression gene) analysis
19 months ago by dsull ★ 7.8k
0
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1
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773
views
Answer: Answer: DEG (Differential expression gene) analysis
19 months ago by dsull ★ 7.8k
3
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1
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1.1k
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Comment: Comment: Average expression of a sample in single-cell data
19 months ago by dsull ★ 7.8k
1
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0
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1.4k
views
Answer: Answer: scRNAseq normalization
19 months ago by dsull ★ 7.8k
0
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0
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567
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Answer: Answer: STAR --sjdbGTFfile in alignment step
20 months ago by dsull ★ 7.8k
1
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0
replies
1.0k
views
Comment: Comment: RNA-seq bam file normalization
20 months ago by dsull ★ 7.8k
1
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1
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1.1k
views
Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
20 months ago by dsull ★ 7.8k
2
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0
replies
1.4k
views
Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
20 months ago by dsull ★ 7.8k
4
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1
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1.4k
views
Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
20 months ago by dsull ★ 7.8k
1
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1
reply
1.5k
views
Comment: Comment: Huge decrease of BUS records using bustools
20 months ago by dsull ★ 7.8k
0
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1
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815
views
Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
20 months ago by dsull ★ 7.8k
3
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0
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1.5k
views
Answer: Answer: Would reaching out to local labs and startups help with my career transition?
20 months ago by dsull ★ 7.8k
0
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0
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1.7k
views
Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 20 months ago by 45k • written 20 months ago by ★ 7.8k
0
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0
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1.7k
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
20 months ago by dsull ★ 7.8k
2
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0
replies
1.9k
views
Comment: Comment: How does kallisto handle multi mapped reads?
20 months ago by dsull ★ 7.8k
0
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0
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660
views
Answer: Answer: Using tophat2 output for kallisto
20 months ago by dsull ★ 7.8k
0
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2
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1.9k
views
Comment: Comment: How does kallisto handle multi mapped reads?
20 months ago by dsull ★ 7.8k
2
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1
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1.4k
views
Answer: Answer: bulk seq vs. sc-seq
21 months ago by dsull ★ 7.8k
0
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1
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1.9k
views
Comment: Comment: Differential expression analysis with very high duplication rate
21 months ago by dsull ★ 7.8k
0
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1
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1.9k
views
Answer: Answer: Differential expression analysis with very high duplication rate
21 months ago by dsull ★ 7.8k
1
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0
replies
1.1k
views
Answer: Answer: How to do DESeq2 on Kallisto Data
21 months ago by dsull ★ 7.8k
0
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1
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1.4k
views
Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
21 months ago by dsull ★ 7.8k
804 results • Page 5 of 17
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