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Comment: Comment: Kallisto bustools for scRNA-seq
12 hours ago by dsull ★ 4.0k
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157
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Answer: Answer: Confused on strandedness, what are antisense transcripts?
23 hours ago by dsull ★ 4.0k
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202
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Answer: Answer: Multiple samples and species with kallisto bus(tools)
5 days ago by dsull ★ 4.0k
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430
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Answer: Answer: STARsolo
11 days ago by dsull ★ 4.0k
3
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1
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429
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Comment: Comment: STARsolo issue
14 days ago by dsull ★ 4.0k
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321
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Comment: Comment: how to use tcga website with nmf
15 days ago by dsull ★ 4.0k
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1.1k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
17 days ago by dsull ★ 4.0k
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1
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1.1k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
17 days ago by dsull ★ 4.0k
1
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292
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Answer: Answer: kallisto -s o error
18 days ago by dsull ★ 4.0k
1
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1
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417
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Comment: Comment: 10X V3 library with only one fastq file
18 days ago by dsull ★ 4.0k
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0
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183
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
20 days ago by dsull ★ 4.0k
6
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1
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308
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
20 days ago by dsull ★ 4.0k
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0
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1.1k
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Comment: Comment: Get TPM from RNA counts and gene length?
22 days ago by dsull ★ 4.0k
3
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2
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1.1k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
26 days ago by dsull ★ 4.0k
1
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0
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1.1k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
26 days ago by dsull ★ 4.0k
0
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0
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1.1k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
27 days ago by dsull ★ 4.0k
1
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2
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1.1k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
27 days ago by dsull ★ 4.0k
1
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0
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1.1k
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Comment: Comment: Get TPM from RNA counts and gene length?
4 weeks ago by dsull ★ 4.0k
1
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0
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253
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Comment: Comment: How to do differential expression without having replicates
5 weeks ago by dsull ★ 4.0k
1
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0
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652
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Comment: Comment: Aberrant splicing in bulk RNAseq
5 weeks ago by dsull ★ 4.0k
1
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1
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652
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Comment: Comment: Aberrant splicing in bulk RNAseq
5 weeks ago by dsull ★ 4.0k
3
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0
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704
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Comment: Comment: What are Differentially Expressed Genes ?!!
5 weeks ago by dsull ★ 4.0k
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1
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295
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
6 weeks ago by dsull ★ 4.0k
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1
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366
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
9 weeks ago by dsull ★ 4.0k
1
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0
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382
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
9 weeks ago by dsull ★ 4.0k
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 weeks ago by dsull ★ 4.0k
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0
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 weeks ago by dsull ★ 4.0k
0
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0
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603
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Comment: Comment: Is it possible to convert transcript-level to gene-level dataset to use it in DE
10 weeks ago by dsull ★ 4.0k
1
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1
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603
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
10 weeks ago by dsull ★ 4.0k
2
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0
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382
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Answer: Answer: Circular deBuijn Graph
12 weeks ago by dsull ★ 4.0k
1
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0
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810
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Comment: Comment: How to get transcriptome reference?
12 weeks ago by dsull ★ 4.0k
1
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0
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810
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Answer: Answer: How to get transcriptome reference?
12 weeks ago by dsull ★ 4.0k
1
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1
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1.3k
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Comment: Comment: downloading raw scRNA seq data from NCBI
3 months ago by dsull ★ 4.0k
0
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0
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1.3k
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Comment: Comment: downloading raw scRNA seq data from NCBI
3 months ago by dsull ★ 4.0k
0
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0
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1.1k
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Comment: Comment: A Computer Scientist who wants to start Bioinformatics
3 months ago by dsull ★ 4.0k
0
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0
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684
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Comment: Comment: is there any tool for SRA metadata analysis?
3 months ago by dsull ★ 4.0k
0
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1
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763
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Comment: Comment: Issues with chromosome file in kallisto
3 months ago by dsull ★ 4.0k
2
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1
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492
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
3 months ago by dsull ★ 4.0k
1
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1
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763
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Answer: Answer: Issues with chromosome file in kallisto
3 months ago by dsull ★ 4.0k
1
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1
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684
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Comment: Comment: is there any tool for SRA metadata analysis?
3 months ago by dsull ★ 4.0k
2
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1
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394
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
3 months ago by dsull ★ 4.0k
1
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0
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336
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Comment: Comment: Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
3 months ago by dsull ★ 4.0k
0
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0
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633
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Comment: Comment: FPKM file differentilly gene anaylsis
3 months ago by dsull ★ 4.0k
2
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1
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275
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
3 months ago by dsull ★ 4.0k
2
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1
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745
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Comment: Comment: Building index with kallisto, keeps getting killed.
3 months ago by dsull ★ 4.0k
2
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1
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745
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Answer: Answer: Building index with kallisto, keeps getting killed.
3 months ago by dsull ★ 4.0k
1
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1
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633
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Answer: Answer: FPKM file differentilly gene anaylsis
3 months ago by dsull ★ 4.0k
1
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0
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395
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Comment: Comment: Random forest with DE genes
3 months ago by dsull ★ 4.0k
2
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1
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395
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Answer: Answer: Random forest with DE genes
3 months ago by dsull ★ 4.0k
2
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0
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258
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
3 months ago by dsull ★ 4.0k
397 results • Page 1 of 8
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