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340
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Comment: Comment: How should I make kallisto indexes?
1 day ago by dsull ★ 5.9k
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340
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Comment: Comment: How should I make kallisto indexes?
1 day ago by dsull ★ 5.9k
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340
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Answer: Answer: How should I make kallisto indexes?
1 day ago by dsull ★ 5.9k
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247
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Comment: Comment: High Malat-1 expression in single cell data
1 day ago by dsull ★ 5.9k
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336
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Comment: Comment: What does it mean single base resolution in sequencing?
1 day ago by dsull ★ 5.9k
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247
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Answer: Answer: High Malat-1 expression in single cell data
1 day ago by dsull ★ 5.9k
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336
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Comment: Comment: What does it mean single base resolution in sequencing?
2 days ago by dsull ★ 5.9k
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336
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Answer: Answer: What does it mean single base resolution in sequencing?
2 days ago by dsull ★ 5.9k
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1.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
2 days ago by dsull ★ 5.9k
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1
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1.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
2 days ago by dsull ★ 5.9k
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659
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Comment: Comment: Heatmap and rna-seq
3 days ago by dsull ★ 5.9k
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659
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Answer: Answer: Heatmap and rna-seq
3 days ago by dsull ★ 5.9k
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1
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314
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
4 days ago by dsull ★ 5.9k
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475
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Comment: Comment: To get p-values for the TPM
5 days ago by dsull ★ 5.9k
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1
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475
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Comment: Comment: To get p-values for the TPM
6 days ago by dsull ★ 5.9k
1
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2
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475
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Answer: Answer: To get p-values for the TPM
6 days ago by dsull ★ 5.9k
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1
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477
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
6 days ago by dsull ★ 5.9k
2
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1
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477
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
8 days ago by dsull ★ 5.9k
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343
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Answer: Answer: How to establish haplotype-specific gene expression levels
4 days ago by dsull ★ 5.9k
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259
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Comment: Comment: from row count to tpm
8 days ago by dsull ★ 5.9k
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194
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
14 days ago by dsull ★ 5.9k
1
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1
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525
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
20 days ago by dsull ★ 5.9k
1
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1
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525
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
20 days ago by dsull ★ 5.9k
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1
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343
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Comment: Comment: How to to establish haplotype-specific gene expression levels
20 days ago by dsull ★ 5.9k
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276
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Comment: Comment: rRNA depletion of RIP-seq samples
21 days ago by dsull ★ 5.9k
1
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1
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210
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
22 days ago by dsull ★ 5.9k
1
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269
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
26 days ago by dsull ★ 5.9k
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495
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Comment: Comment: Installing Cell Ranger
29 days ago by dsull ★ 5.9k
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0
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398
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Comment: Comment: DESeq2 and normalization
4 weeks ago by dsull ★ 5.9k
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0
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568
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Comment: Comment: STAR aligner options
4 weeks ago by dsull ★ 5.9k
1
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0
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853
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
4 weeks ago by dsull ★ 5.9k
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1
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568
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Comment: Comment: STAR aligner options
4 weeks ago by dsull ★ 5.9k
1
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1
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398
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Answer: Answer: DESeq2 and normalization
4 weeks ago by dsull ★ 5.9k
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0
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7.1k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
5 weeks ago by dsull ★ 5.9k
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1
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7.1k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
5 weeks ago by dsull ★ 5.9k
1
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1
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725
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.9k
1
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1
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725
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.9k
0
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0
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238
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Comment: Comment: DEG (Differential expression gene) analysis
6 weeks ago by dsull ★ 5.9k
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1
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238
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Answer: Answer: DEG (Differential expression gene) analysis
6 weeks ago by dsull ★ 5.9k
3
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1
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373
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Comment: Comment: Average expression of a sample in single-cell data
6 weeks ago by dsull ★ 5.9k
1
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0
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393
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Answer: Answer: scRNAseq normalization
6 weeks ago by dsull ★ 5.9k
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0
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160
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Answer: Answer: STAR --sjdbGTFfile in alignment step
6 weeks ago by dsull ★ 5.9k
1
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0
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319
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Comment: Comment: RNA-seq bam file normalization
7 weeks ago by dsull ★ 5.9k
1
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1
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295
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
8 weeks ago by dsull ★ 5.9k
2
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0
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368
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.9k
4
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1
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368
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.9k
1
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1
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630
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Comment: Comment: Huge decrease of BUS records using bustools
9 weeks ago by dsull ★ 5.9k
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1
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273
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
9 weeks ago by dsull ★ 5.9k
3
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564
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
9 weeks ago by dsull ★ 5.9k
0
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0
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583
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 5.9k
613 results • Page 1 of 13
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