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1
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13k
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Comment: C: correcting for a batch in DESeq2
10.0 years ago by Martombo ★ 3.2k
0
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1
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13k
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Comment: C: correcting for a batch in DESeq2
10.0 years ago by Martombo ★ 3.2k
0
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1
reply
13k
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Answer: Answer: correcting for a batch in DESeq2
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.2k
1
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0
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3.5k
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Comment: C: DEXSeq run does not produce results
10.0 years ago by Martombo ★ 3.2k
0
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0
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3.3k
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Comment: Comment: Tophat with mm10 gencode
updated 3.0 years ago by 45k • written 10.0 years ago by ★ 3.2k
0
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0
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1.7k
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Comment: C: Demultiplexing at 3'
10.0 years ago by Martombo ★ 3.2k
0
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0
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6.0k
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Comment: C: Regarding 3D PCA Plot in R
10.0 years ago by Martombo ★ 3.2k
39
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11
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39k
views
6 follow
Sjdboverhang Option In Star
updated 2.2 years ago by ▴ 90 • written 11.6 years ago by ★ 3.2k
2
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0
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2.0k
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Comment: C: integrated high throughout sequencing data sets in galaxy
10.1 years ago by Martombo ★ 3.2k
1
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0
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4.0k
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Answer: A: Gene in ncbi
10.1 years ago by Martombo ★ 3.2k
0
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0
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2.9k
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Comment: Comment: Liftover from mm9 to hg19 to identify conserved repetitive elements
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 3.2k
2
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1
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3.4k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
10.2 years ago by Martombo ★ 3.2k
1
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2
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3.4k
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Comment: C: ViennaPackage define output file name and location(RNAplfold)
10.2 years ago by Martombo ★ 3.2k
0
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0
replies
3.9k
views
Comment: Comment: How to discover new mutations in a derived strain relative to a reference genome
updated 2.9 years ago by 45k • written 10.2 years ago by ★ 3.2k
1
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0
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14k
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Comment: C: Hg19 regions for Intergenic, Promoters, Enhancer, Exon, Intron, 5-UTR, 3-UTR and
10.2 years ago by Martombo ★ 3.2k
0
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1
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3.9k
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Comment: C: How to discover new mutations in a derived strain relative to a reference genome
10.2 years ago by Martombo ★ 3.2k
1
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0
replies
7.3k
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Comment: Comment: About DESeq2 logFC and pvalue
updated 2.9 years ago by 45k • written 10.2 years ago by ★ 3.2k
0
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0
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14k
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Comment: C: Hg19 regions for Promoters, Enhancer, Exon, Intron and so on
10.2 years ago by Martombo ★ 3.2k
2
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1
reply
6.0k
views
Comment: C: MA plots DESeq: strange MA plots
10.2 years ago by Martombo ★ 3.2k
0
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0
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6.0k
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Comment: Comment: MA plots DESeq: strange MA plots
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 3.2k
1
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1
reply
6.0k
views
Comment: Comment: MA plots DESeq: strange MA plots
updated 2.8 years ago by 45k • written 10.2 years ago by ★ 3.2k
1
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0
replies
15k
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Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
10.2 years ago by Martombo ★ 3.2k
2
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1
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15k
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Comment: C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
10.2 years ago by Martombo ★ 3.2k
0
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1
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3.2k
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Comment: C: Crucial difference between dexseq and HTSeq-count
10.2 years ago by Martombo ★ 3.2k
1
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0
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3.8k
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Comment: C: DGE of RNAseq data using DeSEQ2 - need help with input file
10.2 years ago by Martombo ★ 3.2k
0
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0
replies
3.8k
views
Comment: C: DGE of RNAseq data using DeSEQ2 - need help with input file
10.2 years ago by Martombo ★ 3.2k
0
votes
0
replies
3.9k
views
Comment: Comment: Tophat failed at 'Mapping left_kept_reads to transcriptome'
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
0
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0
replies
5.1k
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Comment: Comment: Trimmomatic does not trim custom adapters in palindrome mode
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
0
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1
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3.9k
views
Comment: Comment: QuasiSeq vs. DESeq2 results
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
0
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1
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3.9k
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Comment: C: QuasiSeq vs. DESeq2 results
10.3 years ago by Martombo ★ 3.2k
1
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0
replies
4.1k
views
Answer: Answer: Hi blog how to calculate differntial expression analysis if thre is no replicate
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
1
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1
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4.2k
views
Comment: Comment: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 3.2 years ago by 45k • written 10.3 years ago by ★ 3.2k
1
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1
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4.2k
views
Answer: Answer: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 3.2 years ago by 45k • written 10.3 years ago by ★ 3.2k
3
votes
2
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3.3k
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Answer: Answer: replace first column based on third column in modeled PDB file
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
0
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0
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2.8k
views
Comment: Comment: Mapping low coverage RNAseq at gene-level rather than exon level
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 3.2k
0
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1
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3.6k
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Comment: Comment: Unexpected RNASeq result in shRNA experiment
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 3.2k
0
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1
reply
3.6k
views
Comment: Comment: Unexpected RNASeq result in shRNA experiment
updated 2.6 years ago by 45k • written 10.4 years ago by ★ 3.2k
0
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1
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3.6k
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Comment: C: How to view and analyze BAM files from SOLiD Bioscope alignment
10.4 years ago by Martombo ★ 3.2k
0
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1
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3.6k
views
Comment: Comment: How to view and analyze BAM files from SOLiD Bioscope alignment
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.2k
2
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1
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3.6k
views
Answer: C: How to view and analyze BAM files from SOLiD Bioscope alignment
10.4 years ago by Martombo ★ 3.2k
0
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0
replies
6.3k
views
Comment: C: What is the best way to handle unmapped reads from RNA-Seq data
10.4 years ago by Martombo ★ 3.2k
2
votes
1
reply
4.2k
views
Answer: Answer: Deseq2 error using HTSeq input for 10 samples with 3 replicates each
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.2k
1
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0
replies
3.3k
views
Comment: C: Why is the quality of contigs better with a merged file than separated files? Us
10.4 years ago by Martombo ★ 3.2k
2
votes
1
reply
3.3k
views
Answer: A: Why is the quality of contigs better with a merged file than separated files? Us
10.4 years ago by Martombo ★ 3.2k
7
votes
1
reply
7.9k
views
Answer: Answer: What is the normalization w.r.t to gene expression counts or values?
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.2k
0
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0
replies
7.9k
views
Comment: Comment: What is the normalization w.r.t to gene expression counts or values?
updated 3.4 years ago by 45k • written 10.4 years ago by ★ 3.2k
1
vote
1
reply
2.0k
views
Comment: Comment: mapping ensembl gene id to an array id
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.2k
5
votes
1
reply
4.4k
views
Answer: Answer: Tophat --max-multihits option
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 3.2k
1
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0
replies
2.2k
views
Answer: Answer: minor introns database
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 3.2k
0
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1
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3.2k
views
Answer: Answer: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 3.2k
324 results • Page 5 of 7
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