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comments
1
vote
2
replies
2.8k
views
Comment:
C: ViennaPackage define output file name and location(RNAplfold)
8.8 years ago by
Martombo
★ 3.1k
0
votes
0
replies
3.1k
views
Comment:
Comment: How to discover new mutations in a derived strain relative to a reference genome
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Martombo
★ 3.1k
1
vote
0
replies
12k
views
Comment:
C: Hg19 regions for Intergenic, Promoters, Enhancer, Exon, Intron, 5-UTR, 3-UTR and
8.8 years ago by
Martombo
★ 3.1k
0
votes
1
reply
3.1k
views
Comment:
C: How to discover new mutations in a derived strain relative to a reference genome
8.8 years ago by
Martombo
★ 3.1k
1
vote
0
replies
6.5k
views
Comment:
Comment: About DESeq2 logFC and pvalue
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Martombo
★ 3.1k
0
votes
0
replies
12k
views
Comment:
C: Hg19 regions for Promoters, Enhancer, Exon, Intron and so on
8.8 years ago by
Martombo
★ 3.1k
2
votes
1
reply
5.4k
views
Comment:
C: MA plots DESeq: strange MA plots
8.8 years ago by
Martombo
★ 3.1k
0
votes
0
replies
5.4k
views
Comment:
Comment: MA plots DESeq: strange MA plots
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Martombo
★ 3.1k
1
vote
1
reply
5.4k
views
Comment:
Comment: MA plots DESeq: strange MA plots
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Martombo
★ 3.1k
1
vote
0
replies
12k
views
Comment:
C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
8.9 years ago by
Martombo
★ 3.1k
2
votes
1
reply
12k
views
Comment:
C: DESeq2 - "all gene-wise dispersion estimates are within 2 orders of magnitude"
8.9 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.8k
views
Comment:
C: Crucial difference between dexseq and HTSeq-count
8.9 years ago by
Martombo
★ 3.1k
1
vote
0
replies
3.5k
views
Comment:
C: DGE of RNAseq data using DeSEQ2 - need help with input file
8.9 years ago by
Martombo
★ 3.1k
0
votes
0
replies
3.5k
views
Comment:
C: DGE of RNAseq data using DeSEQ2 - need help with input file
8.9 years ago by
Martombo
★ 3.1k
0
votes
0
replies
3.6k
views
Comment:
Comment: Tophat failed at 'Mapping left_kept_reads to transcriptome'
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Martombo
★ 3.1k
0
votes
0
replies
4.4k
views
Comment:
Comment: Trimmomatic does not trim custom adapters in palindrome mode
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Martombo
★ 3.1k
0
votes
1
reply
3.2k
views
Comment:
Comment: QuasiSeq vs. DESeq2 results
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Martombo
★ 3.1k
0
votes
1
reply
3.2k
views
Comment:
C: QuasiSeq vs. DESeq2 results
8.9 years ago by
Martombo
★ 3.1k
1
vote
1
reply
3.6k
views
Comment:
Comment: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 22 months ago by
Ram
43k • written 9.0 years ago by
Martombo
★ 3.1k
0
votes
0
replies
2.3k
views
Comment:
Comment: Mapping low coverage RNAseq at gene-level rather than exon level
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.9k
views
Comment:
Comment: Unexpected RNASeq result in shRNA experiment
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.9k
views
Comment:
Comment: Unexpected RNASeq result in shRNA experiment
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.9k
views
Comment:
C: How to view and analyze BAM files from SOLiD Bioscope alignment
9.0 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.9k
views
Comment:
Comment: How to view and analyze BAM files from SOLiD Bioscope alignment
updated 22 months ago by
Ram
43k • written 9.0 years ago by
Martombo
★ 3.1k
0
votes
0
replies
5.4k
views
Comment:
C: What is the best way to handle unmapped reads from RNA-Seq data
9.1 years ago by
Martombo
★ 3.1k
1
vote
0
replies
2.8k
views
Comment:
C: Why is the quality of contigs better with a merged file than separated files? Us
9.1 years ago by
Martombo
★ 3.1k
0
votes
0
replies
7.2k
views
Comment:
Comment: What is the normalization w.r.t to gene expression counts or values?
updated 2.0 years ago by
Ram
43k • written 9.1 years ago by
Martombo
★ 3.1k
1
vote
1
reply
1.7k
views
Comment:
Comment: mapping ensembl gene id to an array id
updated 22 months ago by
Ram
43k • written 9.1 years ago by
Martombo
★ 3.1k
0
votes
1
reply
3.2k
views
Comment:
C: Samtool Pileup output format
9.3 years ago by
Martombo
★ 3.1k
0
votes
0
replies
5.6k
views
Comment:
Comment: How to use samtools to assembly a gene?
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Martombo
★ 3.1k
0
votes
1
reply
9.9k
views
Comment:
Comment: htseq-count for RNA Seq
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Martombo
★ 3.1k
1
vote
1
reply
9.9k
views
Comment:
C: htseq-count for RNA Seq
9.4 years ago by
Martombo
★ 3.1k
1
vote
0
replies
2.9k
views
Comment:
Comment: reads mapped in proper pair (99/147) but mapq=0 ?
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.9k
views
Comment:
C: reads mapped in proper pair (99/147) but mapq=0 ?
9.4 years ago by
Martombo
★ 3.1k
0
votes
0
replies
1.1k
views
Comment:
C: Seceretd protein database
9.4 years ago by
Martombo
★ 3.1k
0
votes
0
replies
4.6k
views
Comment:
Comment: Pipeline to get htseq read counts, ignoring alternative splicing
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
1
vote
1
reply
2.3k
views
Comment:
C: ERROR RNA SEQ QC analysis step
9.5 years ago by
Martombo
★ 3.1k
0
votes
0
replies
2.7k
views
Comment:
C: How to represent multiple p-values ?
9.5 years ago by
Martombo
★ 3.1k
1
vote
0
replies
5.7k
views
Comment:
Comment: 23andme: Convert Human Assembly Build 36 to Build 37
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.4k
views
Comment:
Comment: Assess Cufflinks assembly
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
0
votes
0
replies
2.4k
views
Comment:
Comment: Assess Cufflinks assembly
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
3
votes
1
reply
15k
views
Comment:
Comment: Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
0
votes
0
replies
5.8k
views
Comment:
C: Comparative boxplots with R
9.5 years ago by
Martombo
★ 3.1k
1
vote
1
reply
1.9k
views
Comment:
Comment: Fastq Trimmer problem
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
0
votes
1
reply
2.0k
views
Comment:
C: Discerning between mismatch and N
9.5 years ago by
Martombo
★ 3.1k
0
votes
1
reply
4.6k
views
Comment:
Comment: Pipeline to get htseq read counts, ignoring alternative splicing
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
0
votes
1
reply
4.6k
views
Comment:
Comment: Pipeline to get htseq read counts, ignoring alternative splicing
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Martombo
★ 3.1k
2
votes
0
replies
2.9k
views
Comment:
Comment: protein interaction database
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Martombo
★ 3.1k
0
votes
1
reply
5.4k
views
Comment:
C: p-value "NA" in DESeq eventhough counts across the replicates and conditions is
9.8 years ago by
Martombo
★ 3.1k
0
votes
1
reply
3.2k
views
Comment:
C: weird SAM flag explanation
9.8 years ago by
Martombo
★ 3.1k
220 results • Page
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