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comments
38
votes
21
replies
20k
views
8 follow
Tool:
pybam - 100% python BAM reader
python
htspython
bam
pysam
updated 15 months ago by
Ram
44k • written 8.5 years ago by
John
13k
0
votes
1
reply
3.9k
views
Comment:
C: weld (former brew) - yet another fastq utility
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
1
reply
3.9k
views
Comment:
C: weld (former brew) - yet another fastq utility
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.9k
views
Comment:
C: Large difference in mapping times for ChIP data
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
3.9k
views
Comment:
C: brew - yet another fastq utility
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
1
vote
1
reply
3.9k
views
Comment:
C: brew - yet another fastq utility
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
2
votes
1
reply
2.9k
views
Answer:
A: Huge difference in BWA mapping times
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
2
votes
1
reply
11k
views
Comment:
C: Bimodal GC content
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
5.0k
views
Comment:
C: Sailfish TPM normalization: does it take into account the size the library?
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.9k
views
Comment:
C: Huge difference in BWA mapping times
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
1
vote
1
reply
5.0k
views
Answer:
A: Sailfish TPM normalization: does it take into account the size the library?
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
John
13k
5
votes
1
reply
5.4k
views
Answer:
A: PhD research proposal - Need current topics
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.0k
views
Comment:
C: Is there a way to output the single counts for every region with samtools?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.7k
views
Comment:
C: FASTQ / SAM file processing: combining base QUAL scores
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
6.7k
views
Answer:
A: Multiprocessing in Python with subprocess to align several files with coding DNA
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
3
votes
2
replies
5.4k
views
Comment:
C: Something better than GSEA?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
1
reply
3.1k
views
Comment:
C: How to move the last 4 characters of FASTA header to the beginning?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.7k
views
Comment:
C: Identify sequencing adaptor contamination programatically
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
1
vote
0
replies
3.7k
views
Comment:
C: Could you explain the percentage of A, C , G, T in hg19 ?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.7k
views
Comment:
C: Identify sequencing adaptor contamination programatically
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
2
votes
1
reply
8.0k
views
Comment:
C: What is the best way to make a bam file smaller by removing unwanted information
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
1
reply
2.7k
views
Comment:
C: Identify sequencing adaptor contamination programatically
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
John
13k
0
votes
0
replies
2.5k
views
Comment:
C: Illumina no longer services instruments purchased through third parties
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
John
13k
1
vote
0
replies
4.2k
views
Comment:
C: Extract Fastq file from BAM File by reference name using samtools.
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
John
13k
3
votes
0
replies
2.9k
views
Comment:
C: How to decide how broken a gene is
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
John
13k
0
votes
0
replies
32k
views
Comment:
C: C program to find complementary of DNA sequence
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
John
13k
2
votes
0
replies
6.9k
views
Answer:
A: IGV not showing the variants detected by GATK and Varscan
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
1
reply
8.1k
views
Comment:
C: pros- and cons- : programming skills vs. GUI
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
1
reply
8.1k
views
Comment:
C: pros- and cons- : programming skills vs. GUI
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
1
reply
8.1k
views
Comment:
C: pros- and cons- : programming skills vs. GUI
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
4.3k
views
Comment:
C: handling PCR duplicate reads ?
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
2
votes
0
replies
2.0k
views
Comment:
C: Randomly filtering reads from two sam files
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
1
vote
0
replies
3.1k
views
Comment:
C: read length versus unique alignment rate
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
3.1k
views
Comment:
C: In Jellyfish, what does the "-C" switch do?
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
2
votes
2
replies
3.1k
views
Answer:
A: In Jellyfish, what does the "-C" switch do?
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
3.1k
views
Comment:
C: In Jellyfish, what does the "-C" switch do?
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
1
reply
5.8k
views
Comment:
C: How to visualize sequence quality control distribution
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
John
13k
1
vote
2
replies
10k
views
Comment:
C: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
1
reply
10k
views
Comment:
C: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
10k
views
Comment:
C: DNA composition - all k-mers and their frequency in some sequencing data
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
7.8k
views
Comment:
C: Possible augmented reality tools for bioinformatics and current problems
updated 4.9 years ago by
Ram
44k • written 8.9 years ago by
John
13k
0
votes
0
replies
8.1k
views
Comment:
C: Installing cutadapt on OS X
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
0
replies
8.1k
views
Answer:
A: Installing cutadapt on OS X
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
1
reply
2.1k
views
Answer:
A: Post tagging etiquette musings
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
1
reply
5.3k
views
Comment:
C: PCR Primer Design - Specificity
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
6
votes
1
reply
6.0k
views
Comment:
C: Thrown Into A Bioinformatics Position
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
5
votes
1
reply
16k
views
Answer:
A: vcf to bam
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
1
reply
2.0k
views
Comment:
C: Reads mapped to mouse genome coming from?
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
1
reply
4.0k
views
Comment:
C: For the general public seeking advice from this community
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
0
votes
0
replies
3.3k
views
Comment:
C: Wrapping protein sequence output using python
updated 4.9 years ago by
Ram
44k • written 9.0 years ago by
John
13k
1,087 results • Page
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