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38
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21
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21k
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Tool: pybam - 100% python BAM reader
python htspython bam pysam
updated 21 months ago by 45k • written 8.9 years ago by 13k
0
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1
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4.6k
views
Comment: C: weld (former brew) - yet another fastq utility
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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1
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4.6k
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Comment: C: weld (former brew) - yet another fastq utility
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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3.2k
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Comment: C: Large difference in mapping times for ChIP data
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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4.6k
views
Comment: C: brew - yet another fastq utility
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
1
vote
1
reply
4.6k
views
Comment: C: brew - yet another fastq utility
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
2
votes
1
reply
3.2k
views
Answer: A: Huge difference in BWA mapping times
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
2
votes
1
reply
12k
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Comment: C: Bimodal GC content
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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5.4k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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3.2k
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Comment: C: Huge difference in BWA mapping times
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
1
vote
1
reply
5.4k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
5
votes
1
reply
5.8k
views
Answer: A: PhD research proposal - Need current topics
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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2.2k
views
Comment: C: Is there a way to output the single counts for every region with samtools?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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3.0k
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Comment: C: FASTQ / SAM file processing: combining base QUAL scores
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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7.0k
views
Answer: A: Multiprocessing in Python with subprocess to align several files with coding DNA
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
3
votes
2
replies
5.9k
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Comment: C: Something better than GSEA?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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1
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3.3k
views
Comment: C: How to move the last 4 characters of FASTA header to the beginning?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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2.9k
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Comment: C: Identify sequencing adaptor contamination programatically
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
1
vote
0
replies
4.2k
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Comment: C: Could you explain the percentage of A, C , G, T in hg19 ?
updated 5.2 years ago by 45k • written 9.1 years ago by 13k
0
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0
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2.9k
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Comment: C: Identify sequencing adaptor contamination programatically
updated 5.2 years ago by 45k • written 9.2 years ago by 13k
2
votes
1
reply
8.8k
views
Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 5.2 years ago by 45k • written 9.2 years ago by 13k
0
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1
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2.9k
views
Comment: C: Identify sequencing adaptor contamination programatically
updated 5.2 years ago by 45k • written 9.2 years ago by 13k
0
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0
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2.7k
views
Comment: C: Illumina no longer services instruments purchased through third parties
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
1
vote
0
replies
4.4k
views
Comment: C: Extract Fastq file from BAM File by reference name using samtools.
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
3
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0
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3.2k
views
Comment: C: How to decide how broken a gene is
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
replies
32k
views
Comment: C: C program to find complementary of DNA sequence
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
2
votes
0
replies
7.4k
views
Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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1
reply
9.0k
views
Comment: C: pros- and cons- : programming skills vs. GUI
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
votes
1
reply
9.0k
views
Comment: C: pros- and cons- : programming skills vs. GUI
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
votes
1
reply
9.0k
views
Comment: C: pros- and cons- : programming skills vs. GUI
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
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4.5k
views
Comment: C: handling PCR duplicate reads ?
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
2
votes
0
replies
2.1k
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Comment: C: Randomly filtering reads from two sam files
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
1
vote
0
replies
3.2k
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Comment: C: read length versus unique alignment rate
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
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3.5k
views
Comment: C: In Jellyfish, what does the "-C" switch do?
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
2
votes
2
replies
3.5k
views
Answer: A: In Jellyfish, what does the "-C" switch do?
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
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3.5k
views
Comment: C: In Jellyfish, what does the "-C" switch do?
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
votes
1
reply
6.1k
views
Comment: C: How to visualize sequence quality control distribution
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
1
vote
2
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11k
views
Comment: C: DNA composition - all k-mers and their frequency in some sequencing data
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
votes
1
reply
11k
views
Comment: C: DNA composition - all k-mers and their frequency in some sequencing data
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
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11k
views
Comment: C: DNA composition - all k-mers and their frequency in some sequencing data
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
replies
8.6k
views
Comment: C: Possible augmented reality tools for bioinformatics and current problems
updated 5.3 years ago by 45k • written 9.3 years ago by 13k
0
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0
replies
8.4k
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Comment: C: Installing cutadapt on OS X
updated 5.3 years ago by 45k • written 9.4 years ago by 13k
0
votes
0
replies
8.4k
views
Answer: A: Installing cutadapt on OS X
updated 5.3 years ago by 45k • written 9.4 years ago by 13k
0
votes
1
reply
2.3k
views
Answer: A: Post tagging etiquette musings
updated 5.3 years ago by 45k • written 9.4 years ago by 13k
0
votes
1
reply
5.7k
views
Comment: C: PCR Primer Design - Specificity
updated 5.3 years ago by 45k • written 9.4 years ago by 13k
6
votes
1
reply
6.5k
views
Comment: C: Thrown Into A Bioinformatics Position
updated 5.3 years ago by 45k • written 9.4 years ago by 13k
5
votes
1
reply
17k
views
Answer: A: vcf to bam
updated 5.3 years ago by 45k • written 9.5 years ago by 13k
0
votes
1
reply
2.1k
views
Comment: C: Reads mapped to mouse genome coming from?
updated 5.3 years ago by 45k • written 9.5 years ago by 13k
0
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1
reply
4.4k
views
Comment: C: For the general public seeking advice from this community
updated 5.3 years ago by 45k • written 9.5 years ago by 13k
0
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0
replies
3.6k
views
Comment: C: Wrapping protein sequence output using python
updated 5.3 years ago by 45k • written 9.5 years ago by 13k
1,087 results • Page 1 of 22
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