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Comment:
Comment: Problem in loading multiple BAM files in IGV
16 months ago by
yhoogstrate
▴ 140
0
votes
0
replies
1.4k
views
Answer:
Answer: Extract paired-end reads with one end falls within a given region from a bam fil
19 months ago by
yhoogstrate
▴ 140
0
votes
0
replies
2.4k
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Comment:
Comment: High percentage of intronic/intergenic reads in RNA-seq
19 months ago by
yhoogstrate
▴ 140
0
votes
1
reply
2.4k
views
Answer:
Answer: High percentage of intronic/intergenic reads in RNA-seq
20 months ago by
yhoogstrate
▴ 140
1
vote
0
replies
766
views
Answer:
Answer: polyA+ versus polyA- RNA seq from ENCODE
20 months ago by
yhoogstrate
▴ 140
2
votes
2
replies
1.3k
views
Answer:
Answer: RNAseq: Filtering before or after transformation?
22 months ago by
yhoogstrate
▴ 140
0
votes
0
replies
2.7k
views
Comment:
Comment: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by
yhoogstrate
▴ 140
0
votes
1
reply
2.7k
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Comment:
Comment: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by
yhoogstrate
▴ 140
0
votes
0
replies
477
views
Answer:
Answer: HT-seq, No feature, Alignment not unique Output
2.1 years ago by
yhoogstrate
▴ 140
1
vote
0
replies
4.4k
views
Answer:
Answer: How to run MD5 check for many fastq files in subdirectories?
2.2 years ago by
yhoogstrate
▴ 140
0
votes
1
reply
763
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Answer:
Answer: samtools coverage
2.3 years ago by
yhoogstrate
▴ 140
2
votes
0
replies
2.8k
views
Answer:
Answer: Tools to compute Lorenz curve of coverage uniformity
2.3 years ago by
yhoogstrate
▴ 140
1
vote
0
replies
867
views
Answer:
Answer: HTSeq - Extracting exon level read coverage of a specific gene
2.6 years ago by
yhoogstrate
▴ 140
1
vote
1
reply
929
views
Answer:
A: Estimation of RNA-seq protocol from bam files
4.2 years ago by
yhoogstrate
▴ 140
1
vote
0
replies
23k
views
Answer:
A: Lift-over on a VCF
updated 4.6 years ago by
zx8754
11k • written 6.5 years ago by
yhoogstrate
▴ 140
0
votes
0
replies
1.1k
views
Comment:
C: Convert 2 SE bam to PE bam (alignment BWA mem)
5.1 years ago by
yhoogstrate
▴ 140
0
votes
0
replies
3.1k
views
Comment:
C: Subsampling one bamfile multiple times?
5.1 years ago by
yhoogstrate
▴ 140
0
votes
1
reply
6.0k
views
Answer:
A: Merging two fastq.gz files
6.0 years ago by
yhoogstrate
▴ 140
0
votes
0
replies
12k
views
Answer:
A: HOw to merge multifasta sequence into a single sequence having only one header?
6.3 years ago by
yhoogstrate
▴ 140
1
vote
0
replies
19k
views
Answer:
A: How to count fasta sequences efficiently using (or not ) biopython
6.3 years ago by
yhoogstrate
▴ 140
1
vote
0
replies
1.7k
views
Comment:
C: Regarding Sam output
6.4 years ago by
yhoogstrate
▴ 140
2
votes
1
reply
3.6k
views
Answer:
A: STAR GenomeIndex output (which is the BAM file?)
6.4 years ago by
yhoogstrate
▴ 140
2
votes
0
replies
1.9k
views
Answer:
A: Faster (perhaps random) access to BAM files (for collecting statistics like aver
6.5 years ago by
yhoogstrate
▴ 140
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