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Comment: Comment: Problem in loading multiple BAM files in IGV
2.1 years ago by yhoogstrate ▴ 150
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Answer: Answer: Extract paired-end reads with one end falls within a given region from a bam fil
2.4 years ago by yhoogstrate ▴ 150
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Comment: Comment: High percentage of intronic/intergenic reads in RNA-seq
2.4 years ago by yhoogstrate ▴ 150
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Answer: Answer: High percentage of intronic/intergenic reads in RNA-seq
2.4 years ago by yhoogstrate ▴ 150
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Answer: Answer: polyA+ versus polyA- RNA seq from ENCODE
2.4 years ago by yhoogstrate ▴ 150
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Answer: Answer: RNAseq: Filtering before or after transformation?
2.6 years ago by yhoogstrate ▴ 150
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
2.8 years ago by yhoogstrate ▴ 150
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
2.8 years ago by yhoogstrate ▴ 150
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Answer: Answer: HT-seq, No feature, Alignment not unique Output
2.9 years ago by yhoogstrate ▴ 150
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Answer: Answer: How to run MD5 check for many fastq files in subdirectories?
3.0 years ago by yhoogstrate ▴ 150
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953
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Answer: Answer: samtools coverage
3.0 years ago by yhoogstrate ▴ 150
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Answer: Answer: Tools to compute Lorenz curve of coverage uniformity
3.1 years ago by yhoogstrate ▴ 150
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1.0k
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Answer: Answer: HTSeq - Extracting exon level read coverage of a specific gene
3.3 years ago by yhoogstrate ▴ 150
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Answer: A: Estimation of RNA-seq protocol from bam files
5.0 years ago by yhoogstrate ▴ 150
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Answer: A: Lift-over on a VCF
updated 5.4 years ago by 12k • written 7.2 years ago by ▴ 150
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Comment: C: Convert 2 SE bam to PE bam (alignment BWA mem)
5.8 years ago by yhoogstrate ▴ 150
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Comment: C: Subsampling one bamfile multiple times?
5.8 years ago by yhoogstrate ▴ 150
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6.5k
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Answer: A: Merging two fastq.gz files
6.7 years ago by yhoogstrate ▴ 150
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13k
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Answer: A: HOw to merge multifasta sequence into a single sequence having only one header?
7.0 years ago by yhoogstrate ▴ 150
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21k
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Answer: A: How to count fasta sequences efficiently using (or not ) biopython
7.0 years ago by yhoogstrate ▴ 150
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1.9k
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Comment: C: Regarding Sam output
7.1 years ago by yhoogstrate ▴ 150
2
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3.8k
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Answer: A: STAR GenomeIndex output (which is the BAM file?)
7.2 years ago by yhoogstrate ▴ 150
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2.2k
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Answer: A: Faster (perhaps random) access to BAM files (for collecting statistics like aver
7.2 years ago by yhoogstrate ▴ 150
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