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Comment: C: Cancer signature, Transition/Transversion inclduing tri-nucleotide
10.1 years ago by Chirag Nepal ★ 2.4k
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2
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2.4k
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Cancer signature, Transition/Transversion inclduing tri-nucleotide
cosmic-signature SNP transition-transversion exome
updated 3.2 years ago by 45k • written 10.1 years ago by ★ 2.4k
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Comment: C: H3K4me3 and H3K27ac double peaks near TSS
10.1 years ago by Chirag Nepal ★ 2.4k
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Comment: Comment: CNV analysis tool Question With two samples tumor and normal,is there any softwa
updated 3.2 years ago by 45k • written 10.1 years ago by ★ 2.4k
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0
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5.6k
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Comment: Comment: CNV tools for WGS data
updated 4.3 years ago by 45k • written 10.1 years ago by ★ 2.4k
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1
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Comment: C: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
10.1 years ago by Chirag Nepal ★ 2.4k
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1
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7.3k
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Answer: Answer: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 2.4k
64
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13
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15k
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11 follow
Tutorial: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practices.
muTect GATK Picard Exome
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
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Job: Postdoc in translational genomics in the Andersen Group at BRIC, University of Copenhagen : Copenhagen, Denmark
Post-doc
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 2.4k
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0
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Answer: Answer: BI Journals with at least 3-4 impact factor
updated 3.8 years ago by 45k • written 10.1 years ago by ★ 2.4k
1
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1
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5.7k
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Answer: Answer: H3K4me3 and H3K27ac double peaks near TSS
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 2.4k
1
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1
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2.2k
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Comment: C: Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
10.1 years ago by Chirag Nepal ★ 2.4k
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0
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2.4k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 3.1 years ago by 45k • written 10.1 years ago by ★ 2.4k
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Comment: C: How to compare CNV events?
10.1 years ago by Chirag Nepal ★ 2.4k
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0
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2.2k
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Comment: C: Visualizing aCGH in IGV and deletions overlapping amplifications?
10.1 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.6k
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Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
10.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.6k
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Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
10.2 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.4k
views
Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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5
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2.4k
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JISTIC. Make Probe location file to compare copy number among samples
DNAcopy copyNumber JISTIC
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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0
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4.6k
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Comment: Comment: Method To Identify Focal Amplification
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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0
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2.4k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
0
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0
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3.3k
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Comment: Comment: Is there a method as good/superior as GISTIC/JISTIC to detect cancer-driving cop
updated 4.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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1
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2.5k
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Answer: A: Question about mutation spectrum
10.2 years ago by Chirag Nepal ★ 2.4k
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0
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3.9k
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Comment: C: Mutations Not Recognized in MuSiC
10.2 years ago by Chirag Nepal ★ 2.4k
3
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1
reply
3.8k
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varscan2: merge the CNA segments using mergeSegments.pl
CNV mergeSegments.pl varscan
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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0
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3.9k
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Comment: C: Mutations Not Recognized in MuSiC
10.2 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.4k
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Answer: A: What is the best human 3'-UTR annotation?
10.2 years ago by Chirag Nepal ★ 2.4k
0
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0
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7.0k
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Comment: Comment: How can CAGE and RNA-Seq data complement each other?
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
6
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1
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7.0k
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Answer: Answer: How can CAGE and RNA-Seq data complement each other?
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.4k
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1
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4.0k
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Comment: C: Cnv Analysis After Segmentations
10.2 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.8k
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Comment: C: mouse mm10 supporting file for GISTIC 2.0
10.2 years ago by Chirag Nepal ★ 2.4k
0
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0
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8.3k
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Comment: Comment: Varscan, Using The Copycaller
updated 3.7 years ago by 45k • written 10.2 years ago by ★ 2.4k
0
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0
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1.7k
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Comment: Comment: Non-synonomous mutations fall on CDS and (Intron/UTR) due to alternative transcr
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.4k
0
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2
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1.7k
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Non-synonomous mutations fall on CDS and (Intron/UTR) due to alternative transcripts of same gene
polyphen SNP annovar
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.4k
0
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0
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2.6k
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Comment: C: Polyadenylation cleavage sites detection from rRNA-depleted RNA-Seq
10.3 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
29k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
10.3 years ago by Chirag Nepal ★ 2.4k
32
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15
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29k
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GATK, SAM file doesn't have any read groups defined in the header
SAM GATK
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.4k
4
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1
reply
9.0k
views
Answer: A: How can we make this plot?
10.3 years ago by Chirag Nepal ★ 2.4k
2
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1
reply
1.7k
views
Multiple SNPs within few bases
somaticSniper SNP varscan
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 2.4k
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0
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3.8k
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Comment: C: Genome Music - Pathway File
10.4 years ago by Chirag Nepal ★ 2.4k
2
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2
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3.4k
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Answer: Answer: BedTools options - Overlap exons for various bed files
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 2.4k
1
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0
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4.0k
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Comment: Comment: Problems running Genome MuSiC Play
updated 3.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
0
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1
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4.0k
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Comment: Comment: Problems running Genome MuSiC Play
updated 3.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
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0
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2.5k
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Comment: C: Music Error
10.4 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.6k
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Comment: Comment: who can give me the data of genome music bmr calc-covg
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
0
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0
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3.6k
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Comment: Comment: who can give me the data of genome music bmr calc-covg
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
0
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0
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5.7k
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Comment: Comment: Annotate RNA-seq transcripts to transcript class as NMD (nonsense mediated decay
updated 3.5 years ago by 45k • written 10.4 years ago by ★ 2.4k
0
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1
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30k
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Comment: Comment: Are we tricking ourselves with batch effect correction?
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
2
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0
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4.5k
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Answer: Answer: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.4k
0
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0
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4.4k
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Answer: Answer: any tutorials for structural variants filtering and prioritization
updated 3.5 years ago by 45k • written 10.5 years ago by ★ 2.4k
308 results • Page 4 of 7
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