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Comment: Comment: Samtools View: Only Forward Or Reverse Strand
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.4k
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Answer: Answer: Chip-seq reads' trimming
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.4k
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1
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13k
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Comment: Comment: Is Bam One-Based Or Zero-Based?
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 2.4k
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Comment: Comment: filtering rRNA from fastq files or mapping results
updated 3.4 years ago by 45k • written 10.5 years ago by ★ 2.4k
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1
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Random selection of genes from another pool of genes, with similar expression level
expression-level random-selection
updated 3.3 years ago by 45k • written 10.5 years ago by ★ 2.4k
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Answer: A: Why is the cds start and cds end position the same in some of the known-gene dat
10.6 years ago by Chirag Nepal ★ 2.4k
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Comment: C: Read count per exon per transcript
10.6 years ago by Chirag Nepal ★ 2.4k
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Comment: Comment: Read count per exon per transcript
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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1
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6.2k
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Comment: C: Read count per exon per transcript
10.6 years ago by Chirag Nepal ★ 2.4k
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6.2k
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Answer: Answer: Read count per exon per transcript
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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1
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Comment: Comment: Annotate RNA-seq transcripts to transcript class as NMD (nonsense mediated decay
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
2
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8
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Annotate RNA-seq transcripts to transcript class as NMD (nonsense mediated decay)
transcripts nonsense-mediated-decay rna-seq
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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Comment: Comment: Annotate RNA-seq transcripts to transcript class as NMD (nonsense mediated decay
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
1
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3
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3.0k
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count reference and alllele frequency from exome-seq bam
allele-frequency exome variant
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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Answer: Answer: count reference and alllele frequency from exome-seq bam
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
1
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1
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2.5k
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Answer: Answer: RNAseq: how can I extract the "expressed" reads regions from non-coding region?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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Answer: A: get genomic coordinates plus 5kb from Gene Symbols
updated 10.6 years ago by 45k • written 10.6 years ago by ★ 2.4k
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Comment: Comment: Confusion with Varscan somatic filters
updated 3.5 years ago by 45k • written 10.6 years ago by ★ 2.4k
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Varscan Filtering scripts: very little overlap between output of varscan filtering scripts
snv exome varscan filter-varscan
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
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1
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4.3k
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Comment: Comment: Mutect Allele Counts Vs Mpileup
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.4k
1
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Answer: A: Recommendations for good published RNA-seq datasets that examine alternative spl
10.7 years ago by Chirag Nepal ★ 2.4k
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Comment: Comment: muTect analysis, error
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 2.4k
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1
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4.4k
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Comment: Comment: muTect analysis, error
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 2.4k
3
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7
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4.4k
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muTect analysis, error
exome mutect software-error
updated 3.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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1
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25k
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Comment: A: Tcga: "Tumor, Matched Normal" Vs. "Normal, Matched Tumor"
10.8 years ago by Chirag Nepal ★ 2.4k
2
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0
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12k
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Answer: Answer: RNAseq heatmap.2 log2FC clustering
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 2.4k
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1
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15k
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Comment: C: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practic
10.8 years ago by Chirag Nepal ★ 2.4k
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1
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15k
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Comment: C: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practic
10.8 years ago by Chirag Nepal ★ 2.4k
1
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0
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3.7k
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Answer: A: Aligners for small RNAs (microRNAs, siRNAs, piRNAs, etc.)
10.8 years ago by Chirag Nepal ★ 2.4k
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2.2k
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Comment: Comment: how to window non-continuous intervals
updated 3.7 years ago by 45k • written 10.8 years ago by ★ 2.4k
1
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0
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Answer: Answer: Finding the nearest CpG island
updated 3.8 years ago by 45k • written 10.9 years ago by ★ 2.4k
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2
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Answer: Answer: miRNA homology search
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
1
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0
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3.8k
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Answer: Answer: ncRNA incluidng lincRNA analysis
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
1
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1
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3.9k
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Comment: Comment: Memory Allocation for VarScan
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
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4
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3.0k
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Forum: RNA-sequencing on cycloheximide treated RNA from human cells /tissues ?
tissue cell-line RNA-Seq cycloheximide
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
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1
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3.0k
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Comment: Comment: RNA-sequencing on cycloheximide treated RNA from human cells /tissues ?
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
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2
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Comment: C: muTect analysis, error
10.9 years ago by Chirag Nepal ★ 2.4k
0
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0
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6.3k
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Comment: Comment: hg19_cosmic_v54_120711.vcf for mutect analysis
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
1
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3
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6.3k
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hg19_cosmic_v54_120711.vcf for mutect analysis
mutect exome
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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0
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11k
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Comment: C: Mutect Vcf Output
10.9 years ago by Chirag Nepal ★ 2.4k
0
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0
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21k
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Comment: Comment: how to use log transformation with read count data?
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
5
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1
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5.3k
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CIGAR M operator maps off end of reference
CIGAR Exome
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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0
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5.3k
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Comment: C: How To Filter Out Reads With A Bad Cigar M Operator
10.9 years ago by Chirag Nepal ★ 2.4k
0
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0
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5.8k
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Comment: Comment: Discrepancy with Mutect output version 1.1.4 using the --interval option for nor
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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0
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3.4k
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Comment: C: Breakdancer-1.3.6 - Why Are All Svs Reported As Coming From Normal?
10.9 years ago by Chirag Nepal ★ 2.4k
1
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0
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5.5k
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Answer: Answer: Combining RNA-seq data
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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0
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9.9k
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Comment: C: How to find CpG island shore?
10.9 years ago by Chirag Nepal ★ 2.4k
1
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0
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3.2k
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Answer: Answer: miRNA target prediction
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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0
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7.8k
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Comment: Comment: BI Journals with at least 3-4 impact factor
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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1
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7.8k
views
Comment: C: BI Journals with at least 3-4 impact factor
10.9 years ago by Chirag Nepal ★ 2.4k
308 results • Page 5 of 7
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