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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
10.9 years ago by Chirag Nepal ★ 2.4k
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0
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55k
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Comment: C: Adding Read Groups To Bam Files
10.9 years ago by Chirag Nepal ★ 2.4k
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0
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29k
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Comment: C: GATK, SAM file doesn't have any read groups defined in the header
10.9 years ago by Chirag Nepal ★ 2.4k
0
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1
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5.8k
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Comment: Comment: Discrepancy with Mutect output version 1.1.4 using the --interval option for nor
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.4k
3
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Answer: Answer: dbSNP entries of class "single" (SNPs) with length > 1: error or am I missing so
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
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0
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5.9k
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Comment: Comment: How to download a specific sample from TCGA ?
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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1
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8.9k
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Answer: A: How can merge RNA-Seq biological replicates ?
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 2.4k
0
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1
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1.9k
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Ribosome protected fragments on CDS V/S UTR
Ribosome-Protected-Fragments
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
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4.1k
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Comment: C: high throughput sequencing of microRNA
11.0 years ago by Chirag Nepal ★ 2.4k
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0
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4.1k
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Answer: Answer: high throughput sequencing of microRNA
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
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0
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4.1k
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Comment: A: high throughput sequencing of microRNA
11.0 years ago by Chirag Nepal ★ 2.4k
0
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1
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5.8k
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Comment: Comment: Discrepancy with Mutect output version 1.1.4 using the --interval option for nor
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
0
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1
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5.8k
views
Comment: Comment: Discrepancy with Mutect output version 1.1.4 using the --interval option for nor
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
0
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1
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11k
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Answer: Answer: How To Provide Reference Sequence Dictionary To Reordersam?
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
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0
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11k
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Comment: Comment: Mutect Vcf Output
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
0
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1
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25k
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Comment: C: Tcga: "Tumor, Matched Normal" Vs. "Normal, Matched Tumor"
11.0 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.9k
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Answer: A: SNP calling in GATK
11.0 years ago by Chirag Nepal ★ 2.4k
0
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1
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2.4k
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Comment: C: Mirna
11.0 years ago by Chirag Nepal ★ 2.4k
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0
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4.0k
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Comment: Comment: Microarray And Epigenomic Data For Same Cancer Cell Line?
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
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0
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6.5k
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Comment: Comment: Pair-end reads are merged into single file: need to separate
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
0
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1
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6.5k
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Comment: Comment: Pair-end reads are merged into single file: need to separate
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
5
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5
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6.5k
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Pair-end reads are merged into single file: need to separate
Paired-end-reads
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
3
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2
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2.3k
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Answer: Answer: small non-coding RNA
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
0
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0
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3.8k
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Comment: Comment: Determine inner mate distance and insert size of Pair end reads
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
3
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3
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3.8k
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Determine inner mate distance and insert size of Pair end reads
exome paired-end bowtie
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 2.4k
1
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1
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3.9k
views
Answer: Answer: To identify 3'end extended small ncRNA from small RNA seq data
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 2.4k
0
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2
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5.1k
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Comment: Comment: Annotation using annovar
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 2.4k
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0
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2.4k
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Answer: Answer: miRBase Nomenclature not clear enough
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.4k
0
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0
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2.2k
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Answer: A: compute normal-tumor coverage ratio from exome BAMs
11.1 years ago by Chirag Nepal ★ 2.4k
0
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0
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37k
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Comment: C: Samtools View: Only Forward Or Reverse Strand
11.1 years ago by Chirag Nepal ★ 2.4k
0
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1
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11k
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Comment: C: p-values for log fold change in RPKM
11.1 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.5k
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Comment: C: Varscan Filters Not Being Applied
11.1 years ago by Chirag Nepal ★ 2.4k
0
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0
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8.8k
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Comment: Comment: Extract rows from BED file on the base of text content in one column
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.4k
3
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1
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8.8k
views
Answer: Answer: Extract rows from BED file on the base of text content in one column
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.4k
2
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0
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7.2k
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Answer: Answer: tools for GO analysis
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 2.4k
0
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0
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3.8k
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Comment: Comment: Mapping 454 reads to reference genome
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 2.4k
1
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1
reply
3.8k
views
Answer: A: Mapping 454 reads to reference genome
11.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.5k
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Comment: Comment: Varscan2: run in parallel / merge mpile output from diff run into single mpileup
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 2.4k
0
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1
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8.6k
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Comment: Comment: Pick random position from specific genomic regions
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 2.4k
2
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3
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3.5k
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Varscan2: run in parallel / merge mpile output from diff run into single mpileup
exome SNP varcsan
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 2.4k
5
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0
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19k
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Answer: Answer: TSS file for hg19
updated 3.9 years ago by 45k • written 11.3 years ago by ★ 2.4k
0
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0
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2.2k
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Concat multiple CDS and binning, to show relative position of SNP in CDs. How to?
SNPS binning CDS
updated 4.0 years ago by 45k • written 11.4 years ago by ★ 2.4k
1
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0
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3.2k
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Answer: A: miRNA Degradome Sequencing Analysis Flow
11.4 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
4.0k
views
Answer: A: Is the expression value of miRNA precursore is equivalent to it's corresponding
11.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.4k
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Comment: A: Overlaid XY plot with two different colors for control and target genes
11.4 years ago by Chirag Nepal ★ 2.4k
8
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5
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3.4k
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Overlaid XY plot with two different colors for control and target genes
RNA-Seq R
updated 4.0 years ago by 45k • written 11.4 years ago by ★ 2.4k
0
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0
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3.3k
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Comment: C: Is there an online resource with freely available transcriptomes data from?
11.4 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
6.2k
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Comment: C: ngs.plot: Quick mining and visualization of next-generation sequencing data by i
11.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.7k
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Answer: A: Rna-Seq: Distinguish Lncrna Of Smrna Precursors
11.5 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.9k
views
Comment: C: Average Number Of Micro Target Sites For Human Genes
11.5 years ago by Chirag Nepal ★ 2.4k
308 results • Page 6 of 7
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