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2
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2
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2.2k
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Cancer signature, Transition/Transversion inclduing tri-nucleotide
cosmic-signature SNP transition-transversion exome
updated 20 months ago by 43k • written 8.5 years ago by ★ 2.4k
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0
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4.8k
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Comment: C: H3K4me3 and H3K27ac double peaks near TSS
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.0k
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Comment: Comment: CNV analysis tool Question With two samples tumor and normal,is there any softwa
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
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0
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5.1k
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Comment: Comment: CNV tools for WGS data
updated 2.8 years ago by 43k • written 8.6 years ago by ★ 2.4k
1
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1
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6.3k
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Comment: C: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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6.3k
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Answer: Answer: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
64
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13
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13k
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11 follow
Tutorial: Tutorial (How to analyze) on Whole Exome sequencing. Common Errors. Best Practices.
muTect GATK Picard Exome
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.4k
0
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0
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1.9k
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Job: Postdoc in translational genomics in the Andersen Group at BRIC, University of Copenhagen : Copenhagen, Denmark
Post-doc
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
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0
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6.2k
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Answer: Answer: BI Journals with at least 3-4 impact factor
updated 2.3 years ago by 43k • written 8.6 years ago by ★ 2.4k
1
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1
reply
4.8k
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Answer: Answer: H3K4me3 and H3K27ac double peaks near TSS
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
1
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1
reply
1.8k
views
Comment: C: Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.9k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
0
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0
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4.6k
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Comment: C: How to compare CNV events?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.9k
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Comment: C: Visualizing aCGH in IGV and deletions overlapping amplifications?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.0k
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Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.0k
views
Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.9k
views
Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
1
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5
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1.9k
views
JISTIC. Make Probe location file to compare copy number among samples
DNAcopy copyNumber JISTIC
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
0
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0
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4.2k
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Comment: Comment: Method To Identify Focal Amplification
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
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0
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1.9k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
0
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0
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3.0k
views
Comment: Comment: Is there a method as good/superior as GISTIC/JISTIC to detect cancer-driving cop
updated 2.5 years ago by 43k • written 8.7 years ago by ★ 2.4k
0
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1
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2.1k
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Answer: A: Question about mutation spectrum
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.0k
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Comment: C: Mutations Not Recognized in MuSiC
8.7 years ago by Chirag Nepal ★ 2.4k
3
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1
reply
3.5k
views
varscan2: merge the CNA segments using mergeSegments.pl
CNV mergeSegments.pl varscan
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.4k
0
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0
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3.0k
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Comment: C: Mutations Not Recognized in MuSiC
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.0k
views
Answer: A: What is the best human 3'-UTR annotation?
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
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6.1k
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Comment: Comment: How can CAGE and RNA-Seq data complement each other?
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
6
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1
reply
6.1k
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Answer: Answer: How can CAGE and RNA-Seq data complement each other?
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
0
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1
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3.4k
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Comment: C: Cnv Analysis After Segmentations
8.7 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.2k
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Comment: C: mouse mm10 supporting file for GISTIC 2.0
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
7.4k
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Comment: Comment: Varscan, Using The Copycaller
updated 2.2 years ago by 43k • written 8.7 years ago by ★ 2.4k
0
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0
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1.4k
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Comment: Comment: Non-synonomous mutations fall on CDS and (Intron/UTR) due to alternative transcr
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.4k
0
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2
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1.4k
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Non-synonomous mutations fall on CDS and (Intron/UTR) due to alternative transcripts of same gene
polyphen SNP annovar
updated 18 months ago by 43k • written 8.8 years ago by ★ 2.4k
0
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0
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2.4k
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Comment: C: Polyadenylation cleavage sites detection from rRNA-depleted RNA-Seq
8.8 years ago by Chirag Nepal ★ 2.4k
1
vote
1
reply
27k
views
Comment: C: GATK, SAM file doesn't have any read groups defined in the header
8.8 years ago by Chirag Nepal ★ 2.4k
32
votes
15
replies
27k
views
GATK, SAM file doesn't have any read groups defined in the header
SAM GATK
updated 2.3 years ago by 43k • written 9.5 years ago by ★ 2.4k
4
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1
reply
7.4k
views
Answer: A: How can we make this plot?
8.8 years ago by Chirag Nepal ★ 2.4k
2
votes
1
reply
1.5k
views
Multiple SNPs within few bases
somaticSniper SNP varscan
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.4k
0
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0
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3.2k
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Comment: C: Genome Music - Pathway File
8.8 years ago by Chirag Nepal ★ 2.4k
2
votes
2
replies
2.7k
views
Answer: Answer: BedTools options - Overlap exons for various bed files
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.4k
1
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0
replies
3.2k
views
Comment: Comment: Problems running Genome MuSiC Play
updated 2.2 years ago by 43k • written 8.9 years ago by ★ 2.4k
0
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1
reply
3.2k
views
Comment: Comment: Problems running Genome MuSiC Play
updated 2.2 years ago by 43k • written 8.9 years ago by ★ 2.4k
0
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0
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2.2k
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Comment: C: Music Error
8.9 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.0k
views
Comment: Comment: who can give me the data of genome music bmr calc-covg
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.4k
0
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0
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3.0k
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Comment: Comment: who can give me the data of genome music bmr calc-covg
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.4k
0
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0
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4.6k
views
Comment: Comment: Annotate RNA-seq transcripts to transcript class as NMD (nonsense mediated decay
updated 2.0 years ago by 43k • written 8.9 years ago by ★ 2.4k
0
votes
1
reply
23k
views
Comment: Comment: Are we tricking ourselves with batch effect correction?
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.4k
2
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0
replies
4.0k
views
Answer: Answer: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.4k
0
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0
replies
3.9k
views
Answer: Answer: any tutorials for structural variants filtering and prioritization
updated 24 months ago by 43k • written 9.0 years ago by ★ 2.4k
1
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0
replies
34k
views
Comment: Comment: Samtools View: Only Forward Or Reverse Strand
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.4k
307 results • Page 4 of 7
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